# SHANK3 and beta-synuclein are novel blood-based biomarkers for the Phelan-McDermid Syndrome: a pilot study

**Authors:** Jessica Pagano, Andrea Perez Arevalo, Anastasia Nosanova, Helen Friedericke Bauer, Eva Loth, Stephanie Andres, Felicitas Becker, Markus Otto, Alessia Stefanoni, Chiara Verpelli, Patrick Oeckl, Michael Schön, Tobias Boeckers

PMC · DOI: 10.1038/s41398-026-03932-8 · Translational Psychiatry · 2026-03-24

## TL;DR

This study identifies SHANK3 and beta-synuclein as potential blood-based biomarkers for Phelan-McDermid Syndrome, which could help monitor disease progression and treatment response.

## Contribution

The study introduces SHANK3 in PBMCs and plasma beta-synuclein as novel biomarkers for PMS prognosis and therapeutic monitoring.

## Key findings

- SHANK3 protein levels in PBMCs are significantly reduced in PMS patients compared to controls.
- Plasma beta-synuclein levels are elevated in PMS and correlate with speech impairment severity.
- Beta-synuclein levels in a mouse model were normalized by modulating the mGlu5 receptor.

## Abstract

Phelan-McDermid syndrome (PMS) is a relatively frequent cause of syndromic intellectual disability (ID) and autism spectrum disorder (ASD). It is typically caused by genetic alterations in the 22q13 chromosomal region, most often involving heterozygous deletions or mutations in the SHANK3 gene. More than half of affected individuals exhibit functional impairments in speech, cognition, motor skills, and behavior. Despite multiple ongoing therapeutic programs, objective and scalable liquid biomarkers to support patient stratification and to monitor disease course or treatment response are still lacking. Here, in a pilot study involving 23 individuals with PMS, we identified two biomarkers that are significantly altered compared to a control group and are associated with symptom severity. First, SHANK3 protein was detectable in peripheral blood mononuclear cells (PBMCs) and was markedly reduced in PMS (mean −77% vs. controls), consistent with SHANK3 haploinsufficiency; lower PBMC SHANK3 levels were associated with the presence of developmental regression, supporting its potential utility as a target-engagement/monitoring biomarker rather than a diagnostic screen. Additionally, plasma levels of beta-synuclein, a neuron-specific synaptic protein, were elevated in PMS and positively correlated with the severity of speech impairment. Both biomarkers were successfully back-translated in a Shank3 transgenic mouse model, where beta-synuclein levels were normalized through modulation of the mGlu5 receptor. Together, these results provide initial evidence for SHANK3 in PBMCs and plasma beta-synuclein as complementary liquid biomarkers to aid prognosis and enable objective monitoring of therapeutic response in PMS, warranting validation in larger and pediatric longitudinal cohorts.

## Linked entities

- **Genes:** SHANK3 (SH3 and multiple ankyrin repeat domains 3) [NCBI Gene 85358]
- **Proteins:** SHANK3 (SH3 and multiple ankyrin repeat domains 3)
- **Diseases:** Phelan-McDermid Syndrome (MONDO:0011652), intellectual disability (MONDO:0001071), autism spectrum disorder (MONDO:0005258)

## Full-text entities

- **Genes:** Shank3 (SH3 and multiple ankyrin repeat domains 3) [NCBI Gene 58234] {aka Spank-2, proSAP2}, Tyrobp (TYRO protein tyrosine kinase binding protein) [NCBI Gene 22177] {aka DAP12, KARAP, Ly83}, Sncb (synuclein, beta) [NCBI Gene 104069] {aka betaSYN}, Hmgcr (3-hydroxy-3-methylglutaryl-Coenzyme A reductase) [NCBI Gene 15357] {aka HMG-CoAR, Red}, INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, SHANK3 (SH3 and multiple ankyrin repeat domains 3) [NCBI Gene 85358] {aka DEL22q13.3, PROSAP2, PSAP2, SCZD15, SPANK-2}, SNCB (synuclein beta) [NCBI Gene 6620], TREM2 (triggering receptor expressed on myeloid cells 2) [NCBI Gene 54209] {aka AD17, PLOSL2, TREM-2, Trem2a, Trem2b, Trem2c}, Trem2 (triggering receptor expressed on myeloid cells 2) [NCBI Gene 83433] {aka TREM-2, Trem2a, Trem2b, Trem2c}
- **Diseases:** ASD (MESH:D000067877), bipolar disorder (MESH:D001714), syndromic neurodevelopmental disability (MESH:D009069), behavioral deficits (MESH:D019958), gait disorder (MESH:D020233), impaired speech (MESH:D013064), catatonia (MESH:D002389), seizure (MESH:D012640), inflammatory (MESH:D007249), ADHD (MESH:D001289), dysmorphic features (MESH:D000013), infection (MESH:D007239), developmental delay (MESH:D002658), neonatal hypotonia (MESH:D009123), depression (MESH:D003866), epilepsy (MESH:D004827), autism (MESH:D001321), behavioral problems (MESH:D001523), anxiety disorder (MESH:D001008), sleep disorder (MESH:D012893), cognitive impairment (MESH:D003072), muscle weakness (MESH:D018908), ID (MESH:D008607), synaptic dysfunction (MESH:C536122), hyperactivity (MESH:D006948), PMS (MESH:C536801)
- **Chemicals:** VU0409551 (MESH:C000625923), PBS (MESH:D007854), methanol (MESH:D000432), CO2 (MESH:D002245), Tween-20 (MESH:D011136), saline (MESH:D012965), water (MESH:D014867), McDermid (-), Sodium Deoxycholate (MESH:D003840), SYBR Green (MESH:C098022), Triton X-100 (MESH:D017830), AS (MESH:D001151), sodium citrate (MESH:D000077559), DAPI (MESH:C007293), SDS (MESH:D012967), EDTA (MESH:D004492)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** /6 — Homo sapiens (Human), Tongue squamous cell carcinoma, Cancer cell line (CVCL_5985)

## Full text

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## Figures

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## References

1 references — full list in the complete paper: https://tomesphere.com/paper/PMC13039877/full.md

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Source: https://tomesphere.com/paper/PMC13039877