# SMARCA4 promotes lineage plasticity and enzalutamide resistance in prostate cancer by regulating PROX1 via H3K27 acetylation

**Authors:** Chenwei Wu, Mayao Luo, Chaojian Wu, Yi Yuan, Yadong Li, Yuanpeng Liao, Yifan Zhang, Xin Huang, Mengqi Wang, Shidong Lv, Qiang Wei

PMC · DOI: 10.1038/s41420-026-03068-0 · Cell Death Discovery · 2026-03-25

## TL;DR

This study shows that SMARCA4 promotes prostate cancer resistance to enzalutamide by regulating PROX1 through epigenetic changes, offering a new therapeutic target.

## Contribution

The study identifies SMARCA4 as a novel driver of enzalutamide resistance and NEPC progression via its regulation of PROX1 through H3K27 acetylation.

## Key findings

- SMARCA4 is upregulated in enzalutamide-resistant prostate cancer cells.
- SMARCA4 promotes neuroendocrine transformation by enhancing PROX1 expression via H3K27ac.
- Inhibiting SMARCA4 or using HDACi reverses aggressive tumor characteristics.

## Abstract

Enzalutamide resistance is a dynamic process often culminating in the aggressive progression to neuroendocrine prostate cancer (NEPC). This lineage plasticity is hypothesized to be driven by underlying epigenetic alterations, yet the core molecular drivers remain unclear. Elucidating these factors is of significant clinical importance for overcoming resistance. To model this transition, we established a dynamic gradient-resistant cell model simulating the clinical response to enzalutamide, and found robust upregulation of the chromatin remodeling factor SMARCA4 in resistant cells. Both in vitro and in vivo experimental results demonstrated that inhibiting SMARCA4 effectively suppresses tumor progression and reverses neuroendocrine transformation. Mechanistically, integrated multi-omics analysis, correlation studies, and protein interaction experiments revealed the transcription factor PROX1 as a crucial downstream target of SMARCA4, where its inhibition alone was sufficient to reverse the aggressive malignancy and neuroendocrine characteristics of resistant cells. We further demonstrated that SMARCA4 enhances H3K27ac levels and chromatin accessibility at the PROX1 locus to regulate its expression. Importantly, the tumor-suppressive effect of SMARCA4 knockdown could be rescued by histone deacetylase inhibitors (HDACi), achieving a level of recovery comparable to PROX1 overexpression. In summary, this study defines a core epigenetic pathway, showing that increased SMARCA4 activity promotes luminal-to-neuroendocrine transformation by enhancing histone acetylation and chromatin accessibility at the PROX1 locus. Targeting the SMARCA4-PROX1 axis provides a valuable therapeutic strategy for combating enzalutamide resistance and NEPC progression.

## Linked entities

- **Genes:** SMARCA4 (SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4) [NCBI Gene 6597], PROX1 (prospero homeobox 1) [NCBI Gene 5629]
- **Chemicals:** enzalutamide (PubChem CID 15951529)
- **Diseases:** prostate cancer (MONDO:0005159)

## Full-text entities

- **Genes:** SYNM (synemin) [NCBI Gene 23336] {aka DMN, SYN}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, FOXA1 (forkhead box A1) [NCBI Gene 3169] {aka HNF3A, TCF3A}, ALB (albumin) [NCBI Gene 213] {aka FDAHT, HSA, PRO0883, PRO0903, PRO1341}, AR (androgen receptor) [NCBI Gene 367] {aka AIS, AR8, DHTR, HPCX3, HUMARA, HYSP1}, EP300 (EP300 lysine acetyltransferase) [NCBI Gene 2033] {aka KAT3B, MKHK2, RSTS2, p300}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, PAX6 (paired box 6) [NCBI Gene 5080] {aka AN, AN1, AN2, ASGD5, D11S812E, FVH1}, SMARCA4 (SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4) [NCBI Gene 6597] {aka BAF190, BAF190A, BRG1, CSS4, MRD16, OTSC12}, XCL1 (X-C motif chemokine ligand 1) [NCBI Gene 6375] {aka ATAC, LPTN, LTN, SCM-1, SCM-1a, SCM1}, NCAM1 (neural cell adhesion molecule 1) [NCBI Gene 4684] {aka CD56, MSK39, NCAM}, ZEB1 (zinc finger E-box binding homeobox 1) [NCBI Gene 6935] {aka AREB6, BZP, DELTAEF1, FECD6, NIL2A, PPCD3}, ENO2 (enolase 2) [NCBI Gene 2026] {aka HEL-S-279, NSE}, EZH2 (enhancer of zeste 2 polycomb repressive complex 2 subunit) [NCBI Gene 2146] {aka ENX-1, ENX1, EZH2b, KMT6, KMT6A, WVS}, CREBBP (CREB binding lysine acetyltransferase) [NCBI Gene 1387] {aka CBP, KAT3A, MKHK1, RSTS, RSTS1}, EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, RB1 (RB transcriptional corepressor 1) [NCBI Gene 5925] {aka OSRC, PPP1R130, RB, p105-Rb, p110-RB1, pRb}, KDM1A (lysine demethylase 1A) [NCBI Gene 23028] {aka AIMAH3, AOF2, BHC110, CPRF, KDM1, LSD1}, PROX1 (prospero homeobox 1) [NCBI Gene 5629], SYP (synaptophysin) [NCBI Gene 6855] {aka MRX96, MRXSYP, XLID96}, POU5F1 (POU class 5 homeobox 1) [NCBI Gene 5460] {aka OCT3, OCT4, OCT4Borf1, OTF-3, OTF3, OTF4}, STAT5A (signal transducer and activator of transcription 5A) [NCBI Gene 6776] {aka MGF, STAT5}, TMPRSS2 (transmembrane serine protease 2) [NCBI Gene 7113] {aka PRSS10}, CHGA (chromogranin A) [NCBI Gene 1113] {aka CGA, PHE5, PHES}, HDAC9 (histone deacetylase 9) [NCBI Gene 9734] {aka HD7, HD7b, HD9, HDAC, HDAC7B, HDAC9B}, ASCL1 (achaete-scute family bHLH transcription factor 1) [NCBI Gene 429] {aka ASH1, HASH1, MASH1, bHLHa46}, SLTM (SAFB like transcription modulator) [NCBI Gene 79811] {aka Met}
- **Diseases:** Tumor (MESH:D009369), glioma (MESH:D005910), lung and ovarian cancer (MESH:D010051), mycoplasma (MESH:D009175), gastrointestinal cancers (MESH:D005770), NEPC (MESH:D011471), NE (MESH:D018358), small cell lung cancer (MESH:D055752), prostate tumors (MESH:D011472)
- **Chemicals:** penicillin (MESH:D010406), formaldehyde (MESH:D005557), Enzalutamide (MESH:C540278), Hoechst 33342 (MESH:C017807), ATP (MESH:D000255), CO2 (MESH:D002245), crystal violet (MESH:D005840), EdU (MESH:C022811), PVDF (MESH:C024865), streptomycin (MESH:D013307), B27 (-), luminal (MESH:D010634), entinostat (MESH:C118739), SDS (MESH:D012967), DAPI (MESH:C007293), paraformaldehyde (MESH:C003043), charcoal (MESH:D002606), CS (MESH:D002586), CCK-8 (MESH:D012844)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** LASCPC-01 — Homo sapiens (Human), Prostate adenocarcinoma with neuroendocrine differentiation, Cancer cell line (CVCL_UE17), shSMARCA4 — Homo sapiens (Human), Ataxia telangiectasia syndrome, Finite cell line (CVCL_F083), NEPC — Homo sapiens (Human), Metastatic prostate neuroendocrine carcinoma, Cancer cell line (CVCL_C0UV), C2 — Homo sapiens (Human), Neuroblastoma, Cancer cell line (CVCL_0529), NCI-H660 — Homo sapiens (Human), Prostate small cell carcinoma, Cancer cell line (CVCL_1576), LNCaP — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_0395), C3 — Homo sapiens (Human), Hepatoblastoma, Cancer cell line (CVCL_1098), LN-25 — Homo sapiens (Human), Lesch-Nyhan syndrome, Finite cell line (CVCL_F127)

## Full text

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## Figures

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Source: https://tomesphere.com/paper/PMC13039790