# Moonlighting cytosolic function of ACAD9: suppression of TRAF6-mediated osteoclastogenesis and protection against osteoporosis

**Authors:** Mimi Wang, Chao Yuan, Yi Zhang, Mengmeng Peng, Yundie Liu, Ruolin Liu, Zhaode Feng, Zhiwei Yang, Hao Li, Zhongbo Liu, Ying Cheng

PMC · DOI: 10.1038/s41419-026-08626-z · Cell Death & Disease · 2026-03-26

## TL;DR

ACAD9, known for mitochondrial function, also suppresses osteoclast formation in the cytosol, offering new insights into preventing osteoporosis.

## Contribution

Discovery of ACAD9's cytosolic role in suppressing TRAF6-mediated osteoclastogenesis and protecting against osteoporosis.

## Key findings

- ACAD9 deficiency is a risk factor for fragility fractures and osteoporosis.
- ACAD9 inhibits TRAF6 signaling by blocking ubiquitination and promoting its degradation.
- Osteoclast-specific Acad9 knockout mice show increased osteoclasts and reduced bone mass.

## Abstract

Acyl-CoA dehydrogenase-9 (ACAD9) is classically known for its role in mitochondrial fatty acid β-oxidation and complex I assembly. Here, we identify ACAD9 deficiency as a clinically relevant risk factor for fragility fractures and reveal a previously unrecognized cytosolic function of ACAD9 in suppressing osteoclast differentiation, thereby protecting against osteoporosis. Mechanistically, while preserving its canonical mitochondrial role in complex I assembly, we find that ACAD9 also facilitates the formation of respiratory chain supercomplexes. Notably, in the cytosol, ACAD9 competitively binds to TRAF6, preventing its interaction with the E2 ubiquitin-conjugating complex UBC13/UEV1A, and thereby blocking K63-linked polyubiquitination and downstream activation of the RANK/TRAF6/TAK1/NFATc1 signaling cascade. Additionally, ACAD9 promotes K48-linked polyubiquitination of TRAF6, leading to its proteasomal degradation. Osteoclast-specific Acad9 knockout mice exhibit increased osteoclast numbers and decreased bone mass. These findings uncover a novel extramitochondrial function of ACAD9 in regulating osteoclast differentiation and maturation, and offer potential therapeutic insights for targeting osteoclast hyperactivity in osteoporosis.

## Linked entities

- **Genes:** ACAD9 (acyl-CoA dehydrogenase family member 9) [NCBI Gene 28976], TRAF6 (TNF receptor associated factor 6) [NCBI Gene 7189], UBE2N (ubiquitin conjugating enzyme E2 N) [NCBI Gene 7334], UBE2V1 (ubiquitin conjugating enzyme E2 V1) [NCBI Gene 7335], TNFRSF11A (TNF receptor superfamily member 11a) [NCBI Gene 8792], MAP3K7 (mitogen-activated protein kinase kinase kinase 7) [NCBI Gene 6885], NFATC1 (nuclear factor of activated T cells 1) [NCBI Gene 4772]
- **Proteins:** ACAD9 (acyl-CoA dehydrogenase family member 9), TRAF6 (TNF receptor associated factor 6)
- **Diseases:** osteoporosis (MONDO:0005298)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Acad9 (acyl-Coenzyme A dehydrogenase family, member 9) [NCBI Gene 229211] {aka 2600017P15Rik, 4732402K02, C630012L17Rik, NPD002}, CBLL2 (Cbl proto-oncogene like 2) [NCBI Gene 158506] {aka CT138, HAKAIL, ZNF645}, UBE2V1 (ubiquitin conjugating enzyme E2 V1) [NCBI Gene 7335] {aka CIR1, CROC-1, CROC1, UBE2V, UEV-1, UEV1}, Ndufa9 (NADH:ubiquinone oxidoreductase subunit A9) [NCBI Gene 66108] {aka 1010001N11Rik}, Mapk8 (mitogen-activated protein kinase 8) [NCBI Gene 26419] {aka JNK, JNK1, Prkm8, SAPK1}, Map3k7 (mitogen-activated protein kinase kinase kinase 7) [NCBI Gene 26409] {aka B430101B05, Tak1}, MAP3K7 (mitogen-activated protein kinase kinase kinase 7) [NCBI Gene 6885] {aka CSCF, FMD2, MEKK7, TAK1, TGF1a}, Tnfsf11 (tumor necrosis factor (ligand) superfamily, member 11) [NCBI Gene 21943] {aka Ly109l, ODF, OPGL, RANKL, Trance}, Rac1 (Rac family small GTPase 1) [NCBI Gene 19353] {aka D5Ertd559e}, CBL (Cbl proto-oncogene) [NCBI Gene 867] {aka C-CBL, CBL2, FRA11B, NSLL, RNF55}, Slc15a3 (solute carrier family 15, member 3) [NCBI Gene 65221] {aka Ci1, cI-1}, Pik3r1 (phosphoinositide-3-kinase regulatory subunit 1) [NCBI Gene 18708] {aka PI3K, p50alpha, p55alpha, p85alpha}, Ndufaf1 (NADH:ubiquinone oxidoreductase complex assembly factor 1) [NCBI Gene 69702] {aka 2410001M24Rik, CGI-65, CIA30}, Cyld (CYLD lysine 63 deubiquitinase) [NCBI Gene 74256] {aka 2010013M14Rik, 2900009M21Rik, C130039D01Rik, CDMT, CYLD1, EAC}, Nfkb1 (nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105) [NCBI Gene 18033] {aka NF-KB1, NF-kappaB, NF-kappaB1, p105, p50, p50/p105}, Fos (Fos proto-oncogene, AP-1 transcription factor subunit) [NCBI Gene 14281] {aka D12Rfj1, c-fos, cFos}, TRAF6 (TNF receptor associated factor 6) [NCBI Gene 7189] {aka MGC:3310, RNF85}, Mapk14 (mitogen-activated protein kinase 14) [NCBI Gene 26416] {aka CSBP2, Crk1, Csbp1, Mxi2, PRKM14, PRKM15}, Tab2 (TGF-beta activated kinase 1/MAP3K7 binding protein 2) [NCBI Gene 68652] {aka 1110030N06Rik, A530078N03Rik, Map3k7ip2, mKIAA0733}, Ctsk (cathepsin K) [NCBI Gene 13038] {aka MMS10-Q, Ms10q, catK}, Csf1 (colony stimulating factor 1 (macrophage)) [NCBI Gene 12977] {aka BAP025, Csfm, MCSF, Mhdabap25, PG-M-CSF, op}, Nup62 (nucleoporin 62) [NCBI Gene 18226] {aka D7Ertd649e, Nupc1, p62}, Traf6 (TNF receptor-associated factor 6) [NCBI Gene 22034] {aka 2310003F17Rik, C630032O20Rik}, UBE2N (ubiquitin conjugating enzyme E2 N) [NCBI Gene 7334] {aka HEL-S-71, UBC13, UBCHBEN, UBCHBEN; UBC13, UbcH-ben, UbcH13}, Rela (Rela proto-oncogene, NFKB subunit) [NCBI Gene 19697] {aka p65, p65 NF-kappa B, p65 NFkB}, Nfatc1 (nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1) [NCBI Gene 18018] {aka 2210017P03Rik, NF-ATc, NFAT2, NFATc, Nfatcb}, Tab1 (TGF-beta activated kinase 1/MAP3K7 binding protein 1) [NCBI Gene 66513] {aka 2310012M03Rik, Map3k7ip1, b2b449Clo}, Acp5 (acid phosphatase 5, tartrate resistant) [NCBI Gene 11433] {aka TRACP, TRAP}, ACAD9 (acyl-CoA dehydrogenase family member 9) [NCBI Gene 28976] {aka MC1DN20, NPD002}, ECSIT (ECSIT signaling integrator) [NCBI Gene 51295] {aka SITPEC}, Nox1 (NADPH oxidase 1) [NCBI Gene 237038] {aka GP91-2, MOX1, NOH-1, NOH1, NOX1a, NOX1alpha}, Ube2n (ubiquitin-conjugating enzyme E2N) [NCBI Gene 93765] {aka 1500026J17Rik, UBC13}, Blnk (B cell linker) [NCBI Gene 17060] {aka BASH, Bca, Ly-57, Ly57, Lyw-57, SLP-65}, Fosl1 (fos-like antigen 1) [NCBI Gene 14283] {aka Fra1, fra-1}, alp (alopecia, recessive) [NCBI Gene 11691], Cybb (cytochrome b-245, beta polypeptide) [NCBI Gene 13058] {aka CGD91-phox, Cgd, Cyd, Nox2, gp91-1, gp91phox}, TNFSF11 (TNF superfamily member 11) [NCBI Gene 8600] {aka CD254, ODF, OPGL, OPTB2, RANKL, TNLG6B}, Lyz2 (lysozyme 2) [NCBI Gene 17105] {aka Lys, Lysm, Lyzf2, Lyzs, Lzm, Lzm-s1}, Mmp9 (matrix metallopeptidase 9) [NCBI Gene 17395] {aka B/MMP9, Clg4b, Gel B, MMP-9, pro-MMP-9}
- **Diseases:** muscle weakness (MESH:D018908), skeletal disorders (MESH:C564967), Osteoporosis (MESH:D010024), vertebral fractures (MESH:C535781), BMD (MESH:D001851), cardiomyopathy (MESH:D009202), fragility fractures (MESH:D005600), rheumatoid arthritis (MESH:D001172), fracture (MESH:D050723), inflammation (MESH:D007249), mitochondrial complex I deficiency (MESH:C537475), lactic acidosis (MESH:D000140), estrogen (MESH:D056828), bleeding (MESH:D006470), ACAD9-deficient (MESH:D054069), bone loss (MESH:D001847), bone resorption (MESH:D001862), leukemic (MESH:D007938)
- **Chemicals:** alphaMEM (MESH:C420642), sucrose (MESH:D013395), ATP (MESH:D000255), CO2 (MESH:D002245), MG132 (MESH:C072553), His (MESH:D006639), hematoxylin (MESH:D006416), tri-formol (MESH:C011374), biotin (MESH:D001710), EDTA (MESH:D004492), puromycin (MESH:D011691), Resin (MESH:D012116), EGTA (MESH:D004533), formalin (MESH:D005557), N-acetyl-L-cysteine (MESH:D000111), PVDF (MESH:C024865), hydrogen (MESH:D006859), citrate (MESH:D019343), H2DCF-DA (MESH:C110400), CHX (MESH:D003513), Cell culture medium (-), 2',7'-dichlorofluorescein (MESH:C037631), IP (MESH:C041508), 2',7'-dichlorofluorescein diacetate (MESH:C029569), fatty acid (MESH:D005227), hydrogen peroxide (MESH:D006861), amino acids (MESH:D000596), PBS (MESH:D007854)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** K48R, 77-Pro-Leu, V for 45-60, K63R, Phe-Phe-82, K48, lysine mutated to arginine
- **Cell lines:** C57BL/6J — Mus musculus (Mouse), Transformed cell line (CVCL_C0MW), 293FT — Homo sapiens (Human), Transformed cell line (CVCL_6911), RAW264.7 — Mus musculus (Mouse), Mouse leukemia, Cancer cell line (CVCL_0493)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC13039524/full.md

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13039524/full.md

## References

6 references — full list in the complete paper: https://tomesphere.com/paper/PMC13039524/full.md

---
Source: https://tomesphere.com/paper/PMC13039524