# Acetylation-triggered degradation of MSX1 impairs palatal development

**Authors:** Li Meng, Jiawen You, Zhongyin Zhang, Yucheng Jiang, Yulan Liu, Mingliang Zhou, Junqing Ma, Xinquan Jiang

PMC · DOI: 10.1038/s41420-026-03018-w · Cell Death Discovery · 2026-03-19

## TL;DR

This study shows that acetylation of the MSX1 protein disrupts palatal development, leading to cleft palate, and suggests targeting this process could help prevent or treat the condition.

## Contribution

The study identifies acetylation as a novel proteostasis switch for MSX1, linking it directly to cleft palate development.

## Key findings

- MSX1 acetylation regulated by SIRT1 controls embryonic palatal mesenchymal cell survival.
- Hyperacetylation of MSX1 in cleft palate models leads to proteasomal degradation and apoptosis.
- Delivery of SIRT1 or MSX1 K139R reduces cleft severity in models.

## Abstract

Cleft palate, a prevalent congenital disorder, arises from dysregulated embryonic palatal fusion, but the posttranslational modifications (PTMs) driving this process remain poorly understood. Here, we report that lysine acetylation is a critical MSX1 proteostasis switch that governs embryonic palatal mesenchymal (EPM) cell survival. We demonstrate in vitro and in vivo that MSX1 protein stability regulation by deacetylase SIRT1-catalyzed acetylation underlies EPM apoptosis and palatal fusion. In atRA-induced cleft palate models, SIRT1 suppression drives MSX1 hyperacetylation, accelerating proteasomal degradation and culminating in EPM apoptosis. Strikingly, transcriptomic profiling revealed the exclusive proteostatic role of acetylation, indicating that MSX1’s structural stability differs from its transcriptional activity—a paradigm distinct from that of classic PTM mechanisms during development. Lentivirus-mediated delivery of the deacetylase SIRT1 or the deacetylation mimic MSX1 K139R significantly reduced cleft severity, indicating its preventive and therapeutic potential in humans. Our work establishes the MSX1 acetylation as both a pathogenic driver and a druggable target in cleft palate, redefining PTM regulation as a central etiological factor in genetic disorders.

## Linked entities

- **Genes:** MSX1 (msh homeobox 1) [NCBI Gene 4487], SIRT1 (sirtuin 1) [NCBI Gene 23411]
- **Proteins:** MSX1 (msh homeobox 1), SIRT1 (sirtuin 1)
- **Chemicals:** atRA (PubChem CID 444795)
- **Diseases:** cleft palate (MONDO:0016064)

## Full-text entities

- **Genes:** Myod1 (myogenic differentiation 1) [NCBI Gene 17927] {aka MYF3, MyoD, Myod-1, bHLHc1}, Ctnnb1 (catenin beta 1) [NCBI Gene 12387] {aka Bfc, Catnb, Mesc}, Dntt (deoxynucleotidyltransferase, terminal) [NCBI Gene 21673] {aka Tdt}, Snai2 (snail family zinc finger 2) [NCBI Gene 20583] {aka Slug, Slugh, Snail2}, Dlx2 (distal-less homeobox 2) [NCBI Gene 13392] {aka DII A, Dlx-2, Tes-1}, Alad (aminolevulinate, delta-, dehydratase) [NCBI Gene 17025] {aka ALADH, Lv}, Msx1 (msh homeobox 1) [NCBI Gene 17701] {aka Hox-7, Hox7, Hox7.1, msh}, Casp3 (caspase 3) [NCBI Gene 12367] {aka A830040C14Rik, AC-3, CASP-3, CC3, CPP-32, CPP32}, UBB (ubiquitin B) [NCBI Gene 7314] {aka HEL-S-50}, Snai1 (snail family zinc finger 1) [NCBI Gene 20613] {aka Sna, Sna1, Snail, Snail1}, HDAC9 (histone deacetylase 9) [NCBI Gene 9734] {aka HD7, HD7b, HD9, HDAC, HDAC7B, HDAC9B}, Dlx5 (distal-less homeobox 5) [NCBI Gene 13395], Bcl2 (B cell leukemia/lymphoma 2) [NCBI Gene 12043] {aka Bcl-2, C430015F12Rik, D630044D05Rik, D830018M01Rik}, Pcna (proliferating cell nuclear antigen) [NCBI Gene 18538], Bax (BCL2-associated X protein) [NCBI Gene 12028], Tgfb1 (transforming growth factor, beta 1) [NCBI Gene 21803] {aka TGF-beta1, TGFbeta1, Tgfb, Tgfb-1}, SIRT1 (sirtuin 1) [NCBI Gene 23411] {aka SIR2, SIR2L1, SIR2alpha}, Hif1a (hypoxia inducible factor 1, alpha subunit) [NCBI Gene 15251] {aka HIF-1-alpha, HIF1-alpha, HIF1alpha, MOP1, bHLHe78}, MSX1 (msh homeobox 1) [NCBI Gene 4487] {aka ECTD3, HOX7, HYD1, STHAG1}, Shh (sonic hedgehog) [NCBI Gene 20423] {aka 9530036O11Rik, Dsh, HHG-1, Hhg1, Hx, Hxl3}, Tag (temporal alpha-galactosidase) [NCBI Gene 107423], Twist1 (twist basic helix-loop-helix transcription factor 1) [NCBI Gene 22160] {aka M-Twist, Pde, Ska10, Ska<m10Jus>, Twist, bHLHa38}, Tgfb3 (transforming growth factor, beta 3) [NCBI Gene 21809] {aka TGF-beta-3, Tgfb-3}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, E2f1 (E2F transcription factor 1) [NCBI Gene 13555] {aka E2F-1, Tg(Wnt1-cre)2Sor, mKIAA4009}, Crebbp (CREB binding protein) [NCBI Gene 12914] {aka CBP, CBP/p300, KAT3A, p300/CBP}, Cdkn1a (cyclin dependent kinase inhibitor 1A) [NCBI Gene 12575] {aka CAP20, CDKI, CIP1, Cdkn1, P21, SDI1}, Ep300 (E1A binding protein p300) [NCBI Gene 328572] {aka A430090G16, A730011L11, KAT3B, p300, p300 HAT}, Bmp2 (bone morphogenetic protein 2) [NCBI Gene 12156] {aka Bmp2a}, MBP (myelin basic protein) [NCBI Gene 4155], Trp53-ps (transformation related protein 53, pseudogene) [NCBI Gene 22060], Hdac3 (histone deacetylase 3) [NCBI Gene 15183], Sirt1 (sirtuin 1) [NCBI Gene 93759] {aka SIR2L1, Sir2, Sir2a, Sir2alpha}, Dlx6 (distal-less homeobox 6) [NCBI Gene 13396]
- **Diseases:** MEPM (MESH:D004482), Cleft palate (MESH:D002972), tooth bud arrest (MESH:D006323), palatal fusion (MESH:D000069337), EPM (MESH:D018236), congenital disorder (MESH:D009358), morphogenetic defect (MESH:D000013), genetic disorders (MESH:D030342), mycoplasma (MESH:D009175), congenital craniofacial defects (MESH:D019465)
- **Chemicals:** Lipofectamine 2000 (MESH:C086724), IPTG (MESH:D007544), dUTP (MESH:C027078), Triton X-100 (MESH:D017830), Ac-K (-), EX527 (MESH:C550547), PVDF (MESH:C024865), streptomycin (MESH:D013307), glycerol (MESH:D005990), TRIzol (MESH:C411644), MG132 (MESH:C072553), SDS (MESH:D012967), DAPI (MESH:C007293), eosin (MESH:D004801), ampicillin (MESH:D000667), PI (MESH:D011419), PFA (MESH:C003043), PBS (MESH:D007854), corn oil (MESH:D003314), H&amp;E (MESH:D006371), penicillin (MESH:D010406), DMSO (MESH:D004121), paraffin (MESH:D010232), CHX (MESH:D003513), TSA (MESH:C012589), RA (MESH:D014212), NaCl (MESH:D012965), NAM (MESH:D009536), DTT (MESH:D004229), P (MESH:D010758), hematoxylin (MESH:D006416), CO2 (MESH:D002245), Tween 20 (MESH:D011136), Coomassie blue (MESH:C048139), S (MESH:D013455), HCl (MESH:D006851)
- **Species:** Danio rerio (leopard danio, species) [taxon 7955], Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606], Escherichia coli BL21(DE3) (strain) [taxon 469008]
- **Mutations:** K139R, K139R, K237R, K243R, C at 120, K243
- **Cell lines:** 293 T — Homo sapiens (Human), Transformed cell line (CVCL_0063), MEPM — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_JX90)

## Full text

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## Figures

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Source: https://tomesphere.com/paper/PMC13039415