# K48 and K63 linkage-competed ubiquitination of BECN1 promotes circPDE4D-mediated autophagy in chronic obstructive pulmonary disease

**Authors:** Ting-Ting Chen, Ming-Yu Wang, Jia-Ying Kang, Guo-Chun Ou, Ru Wang, Da-Wei Zhang, Jing-Jing Ye, Guang-He Fei

PMC · DOI: 10.1038/s41419-026-08582-8 · Cell Death & Disease · 2026-03-19

## TL;DR

This study identifies a circular RNA, circPDE4D, that regulates autophagy and inflammation in COPD through a complex involving BECN1 and SMURF1.

## Contribution

The study reveals a novel regulatory feedback loop involving circPDE4D, miR545-3p, SMURF1, and BECN1 in COPD.

## Key findings

- circPDE4D is downregulated in COPD and correlates with reduced lung function.
- circPDE4D promotes autophagy and reduces inflammation via miR545-3p and SMURF1.
- SMURF1 regulates BECN1 stability through K63-linked ubiquitination, with circPDE4D enhancing this process.

## Abstract

Chronic obstructive pulmonary disease (COPD) is a progressive inflammatory lung disease with limited clinical therapeutic effects to suspend its progression. Circular RNAs (circRNAs) possess regulatory effects in various diseases. However, circRNA-involved regulatory mechanisms in COPD are largely unknown. This study reveals the mechanism of SMURF1-mediated BECN1 ubiquitination, which is competed by Ub-K48 and Ub-K63, driving the circPDE4D-regulated autophagy. Here, circPDE4D is first identified as a downregulated circRNA in COPD. Among patients with COPD, the lower expression of circPDE4D is associated with the reduced lung function values of FEV1/FVC%, FEV1%, and MMEF75/25% predicted. Moreover, circPDE4D promotes autophagy and SG formation, as well as relieves inflammation in vitro and in vivo. Mechanistically, circPDE4D binds with miR545-3p to regulate SMURF1, which functions in apoptosis, autophagy, SG formation, and inflammation. Importantly, SMURF1 interacts with BECN1 to form a complex and recruits Ub-K63 to enhance K63-linked ubiquitination of BECN1, whereas it antagonizes Ub-K48 to govern BECN1 stability. In particular, circPDE4D is indispensable for the SMURF1-induced BECN1 ubiquitination and can enhance the stability of BECN1. Together, this circPDE4D-miR545-3p-SMURF1-BECN1 regulatory feedback loop underlies the circPDE4D-mediated functions and provides valuable insights into the therapeutic application potential of COPD drugs and biomarkers developed based on circPDE4D.

## Linked entities

- **Genes:** BECN1 (beclin 1) [NCBI Gene 8678], SMURF1 (SMAD specific E3 ubiquitin protein ligase 1) [NCBI Gene 57154]
- **Diseases:** chronic obstructive pulmonary disease (MONDO:0005002), COPD (MONDO:0005002)

## Full-text entities

- **Genes:** MAP1LC3A (microtubule associated protein 1 light chain 3 alpha) [NCBI Gene 84557] {aka ATG8E, LC3, LC3A, MAP1ALC3, MAP1BLC3}, MMUT (methylmalonyl-CoA mutase) [NCBI Gene 4594] {aka MCM, MUT}, Map1lc3a (microtubule-associated protein 1 light chain 3 alpha) [NCBI Gene 66734] {aka 1010001H21Rik, 4922501H04Rik, LC3, LC3a}, Cth (cystathionine gamma lyase) [NCBI Gene 107869] {aka 0610010I13Rik, CGL, CSE, Cys3}, BAX (BCL2 associated X, apoptosis regulator) [NCBI Gene 581] {aka BCL2L4}, G3bp1 (G3BP stress granule assembly factor 1) [NCBI Gene 27041] {aka B430204O07, G3bp, mKIAA4115}, Becn1 (beclin 1, autophagy related) [NCBI Gene 56208] {aka Atg6}, Pde4d (phosphodiesterase 4D, cAMP specific) [NCBI Gene 238871] {aka 9630011N22Rik, Dpde3}, SMURF1 (SMAD specific E3 ubiquitin protein ligase 1) [NCBI Gene 57154], MIR545 (microRNA 545) [NCBI Gene 664614] {aka MIRN545, hsa-mir-545, mir-545}, Smurf1 (SMAD specific E3 ubiquitin protein ligase 1) [NCBI Gene 75788] {aka 4930431E10Rik, mKIAA1625}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, SQSTM1 (sequestosome 1) [NCBI Gene 8878] {aka A170, DMRV, EBIAP, FTDALS3, NADGP, OSIL}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}, Il1b (interleukin 1 beta) [NCBI Gene 16176] {aka IL-1beta, Il-1b}, MIR382 (microRNA 382) [NCBI Gene 494331] {aka MIRN382, hsa-mir-382, mir-382}, TOMM20 (translocase of outer mitochondrial membrane 20) [NCBI Gene 9804] {aka MAS20, MOM19, TOM20}, Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, Sqstm1 (sequestosome 1) [NCBI Gene 18412] {aka A170, OSF-6, Osi, STAP, STONE14, p62}, BECN1 (beclin 1) [NCBI Gene 8678] {aka ATG6, VPS30, beclin1}, G3BP1 (G3BP stress granule assembly factor 1) [NCBI Gene 10146] {aka G3BP, HDH-VIII}
- **Diseases:** Inflammation (MESH:D007249), COPD (MESH:D029424), inflammatory lung disease (MESH:D008171), respiratory disease (MESH:D012140), decline of lung function (MESH:D055370), breast cancer (MESH:D001943), diabetic nephropathy (MESH:D003928), fibrosis (MESH:D005355), pulmonary inflammation (MESH:D011014), virus infection (MESH:D014777)
- **Chemicals:** xylene (MESH:D014992), Silver (MESH:D012834), dithiothreitol (MESH:D004229), iodoacetamide (MESH:D007460), actinomycin D (MESH:D003609), FITC (MESH:D016650), carbon dioxide (MESH:D002245), DAPI (MESH:C007293), SDS (MESH:D012967), sodium citrate (MESH:D000077559), paraformaldehyde (MESH:C003043), SYBR Green (MESH:C098022), PI (MESH:D010716), chloroform (MESH:D002725), pentobarbital sodium (MESH:D010424), ethanol (MESH:D000431), Triton X-100 (MESH:D017830), H&amp;E (MESH:D006371), hydrogen peroxide (MESH:D006861), CHX (MESH:D003513), C11875500BT (-), M-O (MESH:D008982), PVDF (MESH:C024865), acetonitrile (MESH:C032159)
- **Species:** Adeno-associated virus (species) [taxon 272636], Nicotiana tabacum (American tobacco, species) [taxon 4097], Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090], Mycoplasma (genus) [taxon 2093]
- **Mutations:** P0017S, A-to-I
- **Cell lines:** BEAS-2B — Homo sapiens (Human), Transformed cell line (CVCL_0168), C11995500BT — Bos taurus (Bovine), Finite cell line (CVCL_WK84), HBEC — Homo sapiens (Human), Telomerase immortalized cell line (CVCL_X489), HPAEpiCs — Homo sapiens (Human), Transformed cell line (CVCL_C1M0), 293T — Homo sapiens (Human), Transformed cell line (CVCL_0063)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC13039329/full.md

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13039329/full.md

## References

4 references — full list in the complete paper: https://tomesphere.com/paper/PMC13039329/full.md

---
Source: https://tomesphere.com/paper/PMC13039329