# tRF-3005a regulates exon skipping of SPAG4 by interacting with RALY to drive gastric cancer progression

**Authors:** Huaiping Cui, Yancong Yuan, Yizhe Yin, Ruihong Gao, Zhaodong Liu, Lipan Peng, Jinshen Wang, Zhu Wang, Tingting Song, Jinglei Liu

PMC · DOI: 10.1038/s41420-026-03049-3 · Cell Death Discovery · 2026-03-24

## TL;DR

A tRNA fragment called tRF-3005a promotes gastric cancer by altering gene splicing and activating a cancer-driving pathway.

## Contribution

The study identifies a new tRF, tRF-3005a, that drives gastric cancer by regulating RALY-mediated splicing of SPAG4.

## Key findings

- tRF-3005a is upregulated in gastric cancer tissues and linked to poor prognosis.
- tRF-3005a promotes cancer cell growth and invasion by suppressing exon 8 skipping in SPAG4.
- tRF-3005a activates the GRB14/PI3K/AKT signaling pathway through RALY interaction.

## Abstract

Transfer RNA-derived fragments (tRFs) are emerging regulators in cancer, yet their role in the development and progression of gastric cancer (GC) remains unclear. Through RNA sequencing technology, this study identified a tRNA-derived fragment, tRF-3005a, that is significantly upregulated in GC tissues and cell lines and is associated with poor prognosis. Functionally, it promotes the proliferation, migration, and invasion of GC cells. Mechanistically, tRF-3005a bound to RALY, enhancing its interaction with SPAG4 mRNA, suppressing exon 8 skipping and leading to an increased generation of oncogenic SPAG4-L isoforms, thereby activating GRB14/PI3K/AKT signaling and ultimately promoting GC progression. This study reveals a novel mechanism wherein tRF-3005a promotes gastric cancer development by regulating RALY-mediated alternative splicing of SPAG4 to activate the GRB14/PI3K/AKT pathway, suggesting it may serve as a prognostic biomarker and therapeutic target.

## Linked entities

- **Genes:** SPAG4 (sperm associated antigen 4) [NCBI Gene 6676], GRB14 (growth factor receptor bound protein 14) [NCBI Gene 2888], PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) [NCBI Gene 5290], AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207]
- **Proteins:** RALY (RALY heterogeneous nuclear ribonucleoprotein)
- **Diseases:** gastric cancer (MONDO:0001056)

## Full-text entities

- **Genes:** AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, Akt1 (Akt serine/threonine kinase 1) [NCBI Gene 11651] {aka Akt, LTR-akt, PKB, PKB/Akt, PKBalpha, Rac}, SUN5 (Sad1 and UNC84 domain containing 5) [NCBI Gene 140732] {aka SPAG4L, SPGF16, TSARG4, dJ726C3.1}, Mki67 (antigen identified by monoclonal antibody Ki 67) [NCBI Gene 17345] {aka D630048A14Rik, Ki-67, Ki67}, HNRNPD (heterogeneous nuclear ribonucleoprotein D) [NCBI Gene 3184] {aka AUF1, AUF1A, HNRPD, P37, hnRNPD0}, EEF1A1 (eukaryotic translation elongation factor 1 alpha 1) [NCBI Gene 1915] {aka CCS-3, CCS3, EE1A1, EEF-1, EEF1A, EF-Tu}, SPAG4 (sperm associated antigen 4) [NCBI Gene 6676] {aka CT127, SUN4}, RALY (RALY heterogeneous nuclear ribonucleoprotein) [NCBI Gene 22913] {aka HNRPCL2, P542}, FLT3LG (fms related receptor tyrosine kinase 3 ligand) [NCBI Gene 2323] {aka FL, FLG3L, FLT3L, IMD125}, TUBA1B (tubulin alpha 1b) [NCBI Gene 10376] {aka K-ALPHA-1}, USP22 (ubiquitin specific peptidase 22) [NCBI Gene 23326] {aka USP3L}, AGO2 (argonaute RISC catalytic component 2) [NCBI Gene 27161] {aka CASC7, EIF2C2, LESKRES, LINC00980, PPD, Q10}, TRNG (tRNA-Gly) [NCBI Gene 4563] {aka MTTG}, CST12P (cystatin 12, pseudogene) [NCBI Gene 106478911] {aka Cst, Ctes4, E2}, GRB14 (growth factor receptor bound protein 14) [NCBI Gene 2888], TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, Grb14 (growth factor receptor bound protein 14) [NCBI Gene 50915]
- **Diseases:** Tumor (MESH:D009369), lung cancer (MESH:D008175), tumorigenesis (MESH:D063646), colorectal cancer (MESH:D015179), tumorigenic (MESH:D002471), hepatocellular carcinoma (MESH:D006528), GC (MESH:D013274), lymph node metastasis (MESH:D008207), breast cancer (MESH:D001943)
- **Chemicals:** PBS (MESH:D007854), crystal violet (MESH:D005840), penicillin (MESH:D010406), trastuzumab (MESH:D000068878), paraffin (MESH:D010232), Lipofectamine 3000 (-), streptomycin (MESH:D013307), N (MESH:D009584), TRIzol (MESH:C411644), Biotin (MESH:D001710), CCK-8 (MESH:D012844), CO2 (MESH:D002245), hematoxylin (MESH:D006416), DAB (MESH:C000469), LY294002 (MESH:C085911), oe (MESH:C108709), paraformaldehyde (MESH:C003043)
- **Species:** Mycoplasma (genus) [taxon 2093], Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** -8 — Xenopus laevis (African clawed frog), Spontaneously immortalized cell line (CVCL_4564), HGC — Homo sapiens (Human), Pancreatic ductal adenocarcinoma, Cancer cell line (CVCL_C827), MKN-28 — Homo sapiens (Human), Gastric tubular adenocarcinoma, Cancer cell line (CVCL_1416), HGC-27 — Homo sapiens (Human), Gastric carcinoma, Cancer cell line (CVCL_1279), CCK-8 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_2873), AGS — Homo sapiens (Human), Gastric adenocarcinoma, Cancer cell line (CVCL_0139), BALB/c — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0184), GES-1 — Homo sapiens (Human), Transformed cell line (CVCL_EQ22), MKN-45 — Homo sapiens (Human), Gastric adenocarcinoma, Cancer cell line (CVCL_0434)

## Full text

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## Figures

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Source: https://tomesphere.com/paper/PMC13039196