# NSUN2 mediates intestinal stem cell expansion and colorectal tumour initiation via MAPK/ERK signalling

**Authors:** Aslihan Bastem Akan, Caroline V. Billard, Szu-Ying Chen, Po-Hsien Huang, Patrizia Cammareri, Vidya Rajasekaran, Adam E. Hall, Paula Preyzner, Sebastian Öther-Gee Pohl, Susan M. Farrington, Malcolm G. Dunlop, Farhat V. N. Din, Kevin B. Myant

PMC · DOI: 10.1038/s41419-026-08560-0 · Cell Death & Disease · 2026-03-19

## TL;DR

This study shows that NSUN2, an enzyme that modifies RNA, helps intestinal stem cells grow and start colorectal tumors by affecting a key signaling pathway.

## Contribution

The study identifies NSUN2 as a novel regulator of intestinal stem cell expansion and tumor initiation through m5C methylation and MAPK/ERK signaling.

## Key findings

- NSUN2 is upregulated in colorectal cancer models and human tumors, and its depletion reduces tumor initiation.
- NSUN2 mediates m5C methylation on mRNAs of ISC regulators and MAPK/ERK pathway components.
- Loss of NSUN2 reduces ERK phosphorylation, but oncogenic KrasG12D can restore ERK signaling and ISC expansion.

## Abstract

Colorectal cancer is initiated by loss of APC, which drives expansion of LGR5+ intestinal stem cell (ISC) populations. Whilst LGR5 + ISC expansion is a critical step for tumour initiation and progression, its regulation is poorly understood. Emerging evidence suggests post-transcriptional RNA modifications play a key role in cancer biology, but their role in CRC initiation has not been explored. Here, we identify the m5C methyltransferase NSUN2 as a key regulator of ISC expansion and intestinal tumourigenesis. NSUN2 is upregulated in multiple CRC mouse models and human tumours, and its depletion impairs ISC expansion and hyperproliferation, leading to reduced tumour initiation. Transcriptome-wide bisulfite sequencing revealed that NSUN2 mediates m5C methylation on mRNAs encoding key ISC regulators and components of the MAPK/ERK pathway. Mechanistically, loss of NSUN2 reduces ERK phosphorylation in Apc-deficient models, and oncogenic KrasG12D expression is sufficient to restore ERK signalling and rescue ISC expansion. Together, this establishes a novel role for NSUN2 as a key regulator of ISC-driven CRC initiation and describes a critical molecular mechanism linking m5C methylation to MAPK-driven stem cell transformation.

## Linked entities

- **Genes:** NSUN2 (NOP2/Sun RNA methyltransferase 2) [NCBI Gene 54888], APC (APC regulator of Wnt signaling pathway) [NCBI Gene 324], LGR5 (leucine rich repeat containing G protein-coupled receptor 5) [NCBI Gene 8549]
- **Proteins:** EPHB2 (EPH receptor B2)
- **Diseases:** colorectal cancer (MONDO:0005575)

## Full-text entities

- **Genes:** Ascl2 (achaete-scute family bHLH transcription factor 2) [NCBI Gene 17173] {aka 2410083I15Rik, Mash2, bHLHa45}, Dab2ip (disabled 2 interacting protein) [NCBI Gene 69601] {aka 2310011D08Rik, Aip1, mKIAA1743}, Lgr5 (leucine rich repeat containing G protein coupled receptor 5) [NCBI Gene 14160] {aka FEX, Gpr49}, NSUN2 (NOP2/Sun RNA methyltransferase 2) [NCBI Gene 54888] {aka MISU, MRT5, SAKI, TRM4}, Spag9 (sperm associated antigen 9) [NCBI Gene 70834] {aka 3110018C07Rik, 4733401I23Rik, 4831406C20Rik, JIP-4, JLP, JSAP2}, APC (APC regulator of Wnt signaling pathway) [NCBI Gene 324] {aka BTPS2, DESMD, DP2, DP2.5, DP3, GS}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, Trdmt1 (tRNA aspartic acid methyltransferase 1) [NCBI Gene 13434] {aka Dnmt2, Rnmt2, m.MmuIIP, met-2}, IGFBP4 (insulin like growth factor binding protein 4) [NCBI Gene 3487] {aka BP-4, HT29-IGFBP, IBP4, IGFBP-4}, LGR5 (leucine rich repeat containing G protein-coupled receptor 5) [NCBI Gene 8549] {aka FEX, GPR49, GPR67, GRP49, HG38}, Pabpc4 (poly(A) binding protein, cytoplasmic 4) [NCBI Gene 230721], Egf (epidermal growth factor) [NCBI Gene 13645], Vil1 (villin 1) [NCBI Gene 22349] {aka Vil}, Kras (Kras proto-oncogene, GTPase) [NCBI Gene 16653] {aka K-Ras, K-Ras 2, K-ras, Ki-ras, Kras-2, Kras2}, Rpl23 (ribosomal protein L23) [NCBI Gene 65019] {aka 2810009A01Rik}, Akt1 (Akt serine/threonine kinase 1) [NCBI Gene 11651] {aka Akt, LTR-akt, PKB, PKB/Akt, PKBalpha, Rac}, SMOC2 (SPARC related modular calcium binding 2) [NCBI Gene 64094] {aka DTDP1, DTDP1A, MST117, MSTP117, MSTP140, SMAP2}, Nelfb (negative elongation factor complex member B) [NCBI Gene 58202] {aka A730008L03Rik, Cobra1, Nelf-b}, Srsf6 (serine and arginine-rich splicing factor 6) [NCBI Gene 67996] {aka 1210001E11Rik, Sfrs6}, Lhx2 (LIM homeobox protein 2) [NCBI Gene 16870] {aka LH2A, Lh-2, Lim2, ap, apterous}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, Nsun2 (NOL1/NOP2/Sun domain family member 2) [NCBI Gene 28114] {aka D13Wsu123e, Misu}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, Nsun7 (NOL1/NOP2/Sun domain family, member 7) [NCBI Gene 70918] {aka 4921525L17Rik}, Eif4g1 (eukaryotic translation initiation factor 4, gamma 1) [NCBI Gene 208643] {aka E030015G23Rik, eIF-4-gamma 1, eIF-4G 1, eIF-4G1, eIF4GI}, MAPK1 (mitogen-activated protein kinase 1) [NCBI Gene 5594] {aka ERK, ERK-2, ERK2, ERT1, MAPK2, NS13}, Eif4ebp2 (eukaryotic translation initiation factor 4E binding protein 2) [NCBI Gene 13688] {aka 2810011I19Rik, 4E-BP2, PHAS-II}, Smoc2 (SPARC related modular calcium binding 2) [NCBI Gene 64074] {aka 1700056C05Rik, 5430426J21Rik, Smoc2l}, LRIG1 (leucine rich repeats and immunoglobulin like domains 1) [NCBI Gene 26018] {aka LIG-1, LIG1}, Eif4ebp1 (eukaryotic translation initiation factor 4E binding protein 1) [NCBI Gene 13685] {aka 4e-bp1, PHAS-I}, Pik3r1 (phosphoinositide-3-kinase regulatory subunit 1) [NCBI Gene 18708] {aka PI3K, p50alpha, p55alpha, p85alpha}, Yap1 (yes-associated protein 1) [NCBI Gene 22601] {aka Yap, Yap65, Yki, Yorkie}, Nsun6 (NOL1/NOP2/Sun domain family member 6) [NCBI Gene 74455] {aka 4933403D21Rik, 4933414E04Rik, NOPD1}, Igfbp4 (insulin-like growth factor binding protein 4) [NCBI Gene 16010] {aka Deb2, IBP-4, IGFBP-4}, Lrig1 (leucine-rich repeats and immunoglobulin-like domains 1) [NCBI Gene 16206] {aka D6Bwg0781e, Img, LIG-1}, Wnk2 (WNK lysine deficient protein kinase 2) [NCBI Gene 75607] {aka 1810073P09Rik, ESTM15, mKIAA1760}, Actb (actin, beta) [NCBI Gene 11461] {aka Actx, E430023M04Rik, beta-actin}, Braf (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 109880] {aka 9930012E13Rik, B-raf, Braf-2, Braf2, C230098H17, D6Ertd631e}, Vcl (vinculin) [NCBI Gene 22330] {aka 9430097D22}, EPHB2 (EPH receptor B2) [NCBI Gene 2048] {aka BDPLT22, CAPB, DRT, EK5, EPHT3, ERK}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, Apc (APC, WNT signaling pathway regulator) [NCBI Gene 11789] {aka CC1, Min, mAPC}, Ctnnb1 (catenin beta 1) [NCBI Gene 12387] {aka Bfc, Catnb, Mesc}, SMAD4 (SMAD family member 4) [NCBI Gene 4089] {aka DPC4, JIP, MADH4, MYHRS}, Ephb2 (Eph receptor B2) [NCBI Gene 13844] {aka Cek5, Drt, ETECK, Erk, Hek5, Nuk}, Rpl34 (ribosomal protein L34) [NCBI Gene 68436] {aka 1100001I22Rik}, Tab1 (TGF-beta activated kinase 1/MAP3K7 binding protein 1) [NCBI Gene 66513] {aka 2310012M03Rik, Map3k7ip1, b2b449Clo}, BMP1 (bone morphogenetic protein 1) [NCBI Gene 649] {aka OI13, PCOLC, PCP, TLD}, Ddx39b (DEAD box helicase 39b) [NCBI Gene 53817] {aka 0610030D10Rik, Bat-1, Bat1, Bat1a, D17H6S81E, D17H6S81E-1}, Mink1 (misshapen-like kinase 1 (zebrafish)) [NCBI Gene 50932] {aka B55, MINK, Map4k6, Ysk2}, Rela (Rela proto-oncogene, NFKB subunit) [NCBI Gene 19697] {aka p65, p65 NF-kappa B, p65 NFkB}, KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845] {aka 'C-K-RAS, C-K-RAS, CFC2, K-RAS2A, K-RAS2B, K-RAS4A}
- **Diseases:** metastatic (MESH:D000092182), Rectum Adenocarcinoma (MESH:D012004), colon tumour (MESH:D003110), cancer (MESH:D009369), CD (MESH:D002575), dislocation (MESH:D004204), epithelial tumour (MESH:D009375), COAD (MESH:D029424), deficient (MESH:D007153), Colorectal cancer (MESH:D015179), gastric, oesophageal, hepatocellular, bladder cancer (MESH:D013274), FAP (MESH:D011125), death (MESH:D003643), ISC (MESH:C567703), adenoma (MESH:D000236), intestinal adenomatous tumour (MESH:D007414), inflammatory bowel disease (MESH:D015212)
- **Chemicals:** Puromycin (MESH:D011691), lithium carbonate (MESH:D016651), Bis-Tris (MESH:C026272), Acetate (MESH:D000085), DTT (MESH:D004229), Tamoxifen (MESH:D013629), CO2 (MESH:D002245), haematoxylin (MESH:D006416), BrdU (MESH:D001973), HCl (MESH:D006851), Methylene blue (MESH:D008751), PBS (MESH:D007854), 5-methylcytidine (MESH:C016568), H&amp;E (MESH:D006371), Penicillin (MESH:D010406), bisulfite (MESH:C042345), paraffin (MESH:D010232), VPA (MESH:D014635), Xylene (MESH:D014992), Resazurin (MESH:C005843), Ponceau S (MESH:C032756), EDTA (MESH:D004492), F-12 (MESH:C007782), polyethylenimine (MESH:D011094), A (MESH:D001151), Eosin (MESH:D004801), paraformaldehyde (MESH:C003043), dT) (MESH:D013936), N1-methyladenosine (MESH:C002230), L-Glutamine (MESH:D005973), Ethanol (MESH:D000431), Polybrene (MESH:D006583), Poly(A) (MESH:D011061), ADF (-), Streptomycin (MESH:D013307)
- **Species:** Mycoplasma (genus) [taxon 2093], Homo sapiens (human, species) [taxon 9606], Photinus pyralis (common eastern firefly, species) [taxon 7054], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** BrafV600E, G12D
- **Cell lines:** HCT15 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0292), HEK 293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), pLKO.1 — Mus musculus (Mouse), Hybridoma (CVCL_C7RB)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13039175/full.md

## References

2 references — full list in the complete paper: https://tomesphere.com/paper/PMC13039175/full.md

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Source: https://tomesphere.com/paper/PMC13039175