# ADA2-deficient cells exhibit increased levels of cell death and metabolic disturbances

**Authors:** Lisa Ehlers, Marjon Wouters, Bethany Pillay, Selket Delafontaine, Giorgia Bucciol, Marco Baggio, Mariia Dzhus, Anneleen Hombrouck, Alexandra Damerau, Lien De Somer, Rik Schrijvers, Steven Vanderschueren, Maarten Jacquemyn, Tilmann Kallinich, Dirk Daelemans, Bart Ghesquière, Patrizia Agostinis, Leen Moens, Isabelle Meyts

PMC · DOI: 10.1038/s41420-026-03027-9 · Cell Death Discovery · 2026-03-23

## TL;DR

ADA2-deficient cells show higher cell death and metabolic issues, which may explain the disease's severity and treatment resistance.

## Contribution

This study identifies increased cell death and metabolic disturbances in ADA2-deficient cells as potential disease mechanisms.

## Key findings

- ADA2-deficient cells exhibit elevated cell death regardless of apoptosis or other death pathway inhibitors.
- Metabolomics revealed impaired pentose phosphate pathway activity in ADA2-deficient cells.
- Increased reactive oxygen species in ADA2-deficient cells were reduced after successful stem cell transplantation.

## Abstract

Deficiency of adenosine deaminase 2 (DADA2) causes a complex phenotype of autoinflammation and immunodeficiency. Bone marrow failure is often refractory to treatment with tumour necrosis factor-alpha (TNF-alpha) inhibitors and additional treatment options are needed. However, the pathomechanisms underlying the disease remain incompletely understood. The aim of this study was to examine the viability and metabolic profile of ADA2-deficient cells and to characterise the activity of different cell death pathways to advance the mechanistic understanding of DADA2. By flow cytometry and western blot, we showed that ADA2-/- U-937 cells and PBMCs from DADA2 patients showed significantly elevated levels of cell death compared with cells expressing wild-type ADA2. Viability of ADA2-deficient cells was not improved by inhibitors of apoptosis, necroptosis, pyroptosis and ferroptosis. Blocking of TNF-alpha, type I interferon and STING signalling as well as reintroduction of wild-type ADA2 protein did not rescue the cell death phenotype in vitro. ADA2-deficient cells had an aberrant morphology with increased cell size and granularity and were impaired in their proliferative capacity. To identify the cause of the impaired viability, we performed 13C glucose tracer metabolomics experiments which revealed disturbances in the pentose phosphate pathway of ADA2-deficient cells. This tended to be associated with increased exposure to intracellular reactive oxygen species that was attenuated in the PBMCs of a DADA2 patient measured after successful hematopoietic stem cell transplantation. Collectively, our findings established increased levels of cell death as a possible pathomechanism of DADA2 and showed that the absence of ADA2 leads to an impairment of the pentose phosphate pathway which may account for the cellular vulnerability of ADA2-deficient cells.

## Linked entities

- **Genes:** ADA2 (adenosine deaminase 2) [NCBI Gene 51816]
- **Proteins:** TNF (tumor necrosis factor), STING1 (stimulator of interferon response cGAMP interactor 1)
- **Diseases:** DADA2 (MONDO:0014306), immunodeficiency (MONDO:0021094)

## Full-text entities

- **Genes:** PHGDH (phosphoglycerate dehydrogenase) [NCBI Gene 26227] {aka 3-PGDH, 3PGDH, HEL-S-113, NLS, NLS1, PDG}, TRADD (TNFRSF1A associated via death domain) [NCBI Gene 8717] {aka Hs.89862}, STING1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 340061] {aka ERIS, MITA, MPYS, NET23, SAVI, STING}, ISG15 (ISG15 ubiquitin like modifier) [NCBI Gene 9636] {aka G1P2, IFI15, IMD38, IP17, UCRP, hUCRP}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, SIGLEC1 (sialic acid binding Ig like lectin 1) [NCBI Gene 6614] {aka CD169, SIGLEC-1, SN}, PLCL1 (phospholipase C like 1 (inactive)) [NCBI Gene 5334] {aka PLCE, PLCL, PLDL1, PPP1R127, PRIP}, CD19 (CD19 molecule) [NCBI Gene 930] {aka B4, CVID3}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, IFI27 (interferon alpha inducible protein 27) [NCBI Gene 3429] {aka FAM14D, ISG12, ISG12A, P27}, IFI44L (interferon induced protein 44 like) [NCBI Gene 10964] {aka C1orf29, GS3686, TLDC5B}, CCL14 (C-C motif chemokine ligand 14) [NCBI Gene 6358] {aka CC-1, CC-3, CKB1, HCC-1, HCC-1(1-74), HCC-1/HCC-3}, CASP3 (caspase 3) [NCBI Gene 836] {aka CPP32, CPP32B, SCA-1}, RIPK1 (receptor interacting serine/threonine kinase 1) [NCBI Gene 8737] {aka AIEFL, IMD57, RIP, RIP-1, RIP1}, CASP1 (caspase 1) [NCBI Gene 834] {aka ICE, IL1BC, P45}, PGD (phosphogluconate dehydrogenase) [NCBI Gene 5226] {aka 6PGD}, RSAD2 (radical S-adenosyl methionine domain containing 2) [NCBI Gene 91543] {aka SAND, cig33, cig5, vig1}, RBKS (ribokinase) [NCBI Gene 64080] {aka RBSK, RK}, G6PD (glucose-6-phosphate dehydrogenase) [NCBI Gene 2539] {aka CNSHA1, G6PD1}, IFIT1 (interferon induced protein with tetratricopeptide repeats 1) [NCBI Gene 3434] {aka C56, G10P1, IFI-56, IFI-56K, IFI56, IFIT-1}, CSF2 (colony stimulating factor 2) [NCBI Gene 1437] {aka CSF, GMCSF}, ANXA5 (annexin A5) [NCBI Gene 308] {aka ANX5, CPB-I, ENX2, HEL-S-7, PP4, RPRGL3}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, CD14 (CD14 molecule) [NCBI Gene 929], TADA2A (transcriptional adaptor 2A) [NCBI Gene 6871] {aka ADA2, ADA2A, KL04P, TADA2L, hADA2}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, GSDMD (gasdermin D) [NCBI Gene 79792] {aka DF5L, DFNA5L, FKSG10, GSDMDC1}, MLKL (mixed lineage kinase domain like pseudokinase) [NCBI Gene 197259] {aka hMLKL}, DIABLO (diablo IAP-binding mitochondrial protein) [NCBI Gene 56616] {aka DFNA64, SMAC}, TADA1 (transcriptional adaptor 1) [NCBI Gene 117143] {aka ADA1, HFI1, STAF42, TADA1L, hADA1}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, IGHG3 (immunoglobulin heavy constant gamma 3 (G3m marker)) [NCBI Gene 3502] {aka IgG3}, TRAF2 (TNF receptor associated factor 2) [NCBI Gene 7186] {aka MGC:45012, RNF117, TRAP, TRAP3}, APC (APC regulator of Wnt signaling pathway) [NCBI Gene 324] {aka BTPS2, DESMD, DP2, DP2.5, DP3, GS}, HPRT1 (hypoxanthine phosphoribosyltransferase 1) [NCBI Gene 3251] {aka HGPRT, HPRT}, RIPK3 (receptor interacting serine/threonine kinase 3) [NCBI Gene 11035] {aka RIP3}
- **Diseases:** RCD (MESH:D003643), deficient (MESH:D007153), HC (MESH:D000067329), vasculitis (MESH:D014657), cytopenia (MESH:D006402), DD (MESH:C536170), inborn error of immunity (MESH:D007154), metabolic (MESH:D008659), autoinflammation (MESH:D056660), inflammation (MESH:D007249), ADA2 deficiency (MESH:C000723487), Bone marrow failure (MESH:D000080983)
- **Chemicals:** C (MESH:D002244), acetone (MESH:D000096), Triton X-100 (MESH:D017830), DFO (MESH:D003676), Lipofectamine  2000 (MESH:C086724), 13C (MESH:C000615229), streptomycin (MESH:D013307), H+ (MESH:D006859), PVDF (MESH:C024865), sodium deoxycholate (MESH:D003840), polybrene (MESH:D006583), 12C glucose (-), Ponceau S (MESH:C032756), TRIzol (MESH:C411644), birinapant (MESH:C582429), Nec-1s (MESH:C507699), Pentose phosphate (MESH:D010428), lipid (MESH:D008055), NaOH (MESH:D012972), NADPH (MESH:D009249), Z-DEVD-FMK (MESH:C110772), DAPI (MESH:C007293), iron (MESH:D007501), SDS (MESH:D012967), paraformaldehyde (MESH:C003043), Fer-1 (MESH:C573944), Adenosine (MESH:D000241), acetic acid (MESH:D019342), methanol (MESH:D000432), ribose (MESH:D012266), penicillin (MESH:D010406), H2O2 (MESH:D006861), PBS (MESH:D007854), glutathione (MESH:D005978), formaldehyde (MESH:D005557), acetonitrile (MESH:C032159), NMP (MESH:C038678), necrosulfonamide (MESH:C570695), ribose-5-phosphate (MESH:C031626), NDP (MESH:C055436), ROS (MESH:D017382), NAD(H) (MESH:D009243), water (MESH:D014867), nucleosides (MESH:D009705), glucose (MESH:D005947), puromycin (MESH:D011691), NaCl (MESH:D012965), ADM (MESH:D000068879), HCl (MESH:D006851), Acetyl (CoA) (MESH:D000105), Rux (MESH:C540383), Z-YVAD-FMK (MESH:C460579), Tween 20 (MESH:D011136), Z-VAD-FMK (MESH:C096713)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606], Escherichia coli (E. coli, species) [taxon 562]
- **Mutations:** S009167492300564X, p.G47A, C3040H
- **Cell lines:** U-937 — Homo sapiens (Human), Adult acute monocytic leukemia, Cancer cell line (CVCL_0007), HEK293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), S2C. C — Canis lupus familiaris (Dog), Canine mastocytoma, Cancer cell line (CVCL_1R44), Jurkat — Homo sapiens (Human), Childhood T acute lymphoblastic leukemia, Cancer cell line (CVCL_0065)

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13039166/full.md

## References

10 references — full list in the complete paper: https://tomesphere.com/paper/PMC13039166/full.md

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Source: https://tomesphere.com/paper/PMC13039166