# A new candidate tumor suppressor tRF-Ser inhibits gastric cancer progression by regulating the CNBP/HSPA8 axis

**Authors:** Jian Jiao, Guangchuan Wang, Jin Liu, Kun Xiao, Zi Gao, Daocong Dong, Keshu Shan, Huaiping Cui, Liang Shang, Leping Li, Chunqing Zhang

PMC · DOI: 10.1038/s41419-026-08608-1 · Cell Death & Disease · 2026-03-25

## TL;DR

A new small RNA called tRF-Ser was found to suppress gastric cancer by regulating a key protein pathway, offering potential for new treatments.

## Contribution

The discovery of tRF-Ser as a tumor suppressor and its regulatory mechanism involving the CNBP/HSPA8 axis in gastric cancer.

## Key findings

- tRF-Ser is significantly downregulated in gastric cancer tissues and cell lines.
- tRF-Ser inhibits cancer progression by inducing ferroptosis and suppressing EMT.
- tRF-Ser interacts with CNBP to regulate HSPA8 and β-catenin signaling.

## Abstract

Gastric cancer (GC) is a highly aggressive malignancy with a poor prognosis. Transfer RNA-derived small RNAs (tsRNAs) are implicated in tumorigenesis, but their precise mechanistic roles in GC progression remain incompletely understood. We performed high-throughput sequencing in four paired GC/normal tissues to profile tsRNAs. The functional and mechanistic role of a candidate tsRNA was systematically investigated, alongside a suite of techniques including fluorescence in situ hybridization, RNA immunoprecipitation, RNA pull-down, chromatin immunoprecipitation, and luciferase reporter assays. We identified a novel tsRNA, tRF-Ser, that was significantly downregulated in GC tissues and cell lines, and its expression was correlated with favorable survival. Functionally, tRF-Ser acted as a tumor suppressor by inhibiting epithelial-mesenchymal transition (EMT), inducing ferroptosis, and enhancing sensitivity to 5-fluorouracil chemotherapy. Mechanistically, tRF-Ser directly bound to the cellular nucleic acid-binding protein CNBP (a transcription factor), promoting its accumulation in the cytoplasm and preventing its binding to the HSPA8 promoter to downregulate HSPA8. Then, the tRF-Ser/CNBP/HSPA8 axis suppressed EMT by inhibiting β-catenin nuclear translocation and promoted ferroptosis by facilitating STUB1-mediated ubiquitination degradation of GPX4. Our study unveils that the tRF-Ser/CNBP/HSPA8 axis may constrain GC progression by regulating energy metabolism, which highlights the therapeutic potential of targeting this axis for GC treatment.

## Linked entities

- **Genes:** CNBP (CCHC-type zinc finger nucleic acid binding protein) [NCBI Gene 7555], HSPA8 (heat shock protein family A (Hsp70) member 8) [NCBI Gene 3312], GPX4 (glutathione peroxidase 4) [NCBI Gene 2879], STUB1 (STIP1 homology and U-box containing protein 1) [NCBI Gene 10273], ctnnb1.S (catenin beta 1 S homeolog) [NCBI Gene 380441]
- **Proteins:** CNBP (CCHC-type zinc finger nucleic acid binding protein), HSPA8 (heat shock protein family A (Hsp70) member 8), GPX4 (glutathione peroxidase 4), STUB1 (STIP1 homology and U-box containing protein 1), ctnnb1.S (catenin beta 1 S homeolog)
- **Chemicals:** 5-fluorouracil (PubChem CID 3385)
- **Diseases:** gastric cancer (MONDO:0001056)

## Full-text entities

- **Genes:** MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, PLK1 (polo like kinase 1) [NCBI Gene 5347] {aka PLK, STPK13}, STUB1 (STIP1 homology and U-box containing protein 1) [NCBI Gene 10273] {aka CHIP, HSPABP2, NY-CO-7, SCA48, SCAR16, SDCCAG7}, TWIST1 (twist family bHLH transcription factor 1) [NCBI Gene 7291] {aka ACS3, BPES2, BPES3, CRS, CRS1, CSO}, TERF1 (telomeric repeat binding factor 1) [NCBI Gene 7013] {aka PIN2, TRBF1, TRF, TRF1, hTRF1-AS, t-TRF1}, BAP1 (BRCA1 associated deubiquitinase 1) [NCBI Gene 8314] {aka HUCEP-13, KURIS, TPDS1, UBM2, UCHL2, UVM2}, MMP9 (matrix metallopeptidase 9) [NCBI Gene 4318] {aka CLG4B, GELB, MANDP2, MMP-9}, CDH1 (cadherin 1) [NCBI Gene 999] {aka Arc-1, BCDS1, CD324, CDHE, ECAD, LCAM}, CAT (catalase) [NCBI Gene 847], CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}, MIR522 (microRNA 522) [NCBI Gene 574495] {aka MIRN522, hsa-mir-522, mir-522}, ALOX15 (arachidonate 15-lipoxygenase) [NCBI Gene 246] {aka 12-LOX, 15-LOX, 15-LOX-1, LOG15}, CCND1 (cyclin D1) [NCBI Gene 595] {aka BCL1, D11S287E, PRAD1, U21B31}, ZCCHC13 (zinc finger CCHC-type containing 13) [NCBI Gene 389874] {aka CNBP2, ZNF9L}, CST6 (cystatin E/M) [NCBI Gene 1474] {aka ECTD15}, HSPA5 (heat shock protein family A (Hsp70) member 5) [NCBI Gene 3309] {aka BIP, GRP78, HEL-S-89n}, MMP2 (matrix metallopeptidase 2) [NCBI Gene 4313] {aka CLG4, CLG4A, MMP-2, MMP-II, MONA, TBE-1}, EEF1A1 (eukaryotic translation elongation factor 1 alpha 1) [NCBI Gene 1915] {aka CCS-3, CCS3, EE1A1, EEF-1, EEF1A, EF-Tu}, VIM (vimentin) [NCBI Gene 7431], RPS16 (ribosomal protein S16) [NCBI Gene 6217] {aka S16, uS9}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, HSPA8 (heat shock protein family A (Hsp70) member 8) [NCBI Gene 3312] {aka HEL-33, HEL-S-72p, HSC54, HSC70, HSC71, HSP71}, MUL1 (mitochondrial E3 ubiquitin protein ligase 1) [NCBI Gene 79594] {aka C1orf166, GIDE, MAPL, MULAN, RNF218}, PTBP1 (polypyrimidine tract binding protein 1) [NCBI Gene 5725] {aka HNRNP-I, HNRNPI, HNRPI, PTB, PTB-1, PTB-T}, TRS-CGA4-1 (tRNA-Ser (anticodon CGA) 4-1) [NCBI Gene 100189152] {aka TRNAS11}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, E2F2 (E2F transcription factor 2) [NCBI Gene 1870] {aka E2F-2}, MMP14 (matrix metallopeptidase 14) [NCBI Gene 4323] {aka MMP-14, MMP-X1, MT-MMP, MT-MMP 1, MT1-MMP, MT1MMP}, SNAI1 (snail family transcriptional repressor 1) [NCBI Gene 6615] {aka SLUGH2, SNA, SNAH, SNAIL, SNAIL1, dJ710H13.1}, GPX4 (glutathione peroxidase 4) [NCBI Gene 2879] {aka GPx-4, GSHPx-4, MCSP, PHGPx, SMDS, snGPx}, CDH2 (cadherin 2) [NCBI Gene 1000] {aka ACOGS, ADHD8, ARVD14, CD325, CDHN, CDw325}, HSPA4 (heat shock protein family A (Hsp70) member 4) [NCBI Gene 3308] {aka APG-2, HEL-S-5a, HS24/P52, HSPH2, RY, hsp70}, CNBP (CCHC-type zinc finger nucleic acid binding protein) [NCBI Gene 7555] {aka CNBP1, DM2, PROMM, RNF163, ZCCHC22, ZNF9}
- **Diseases:** neuroblastoma (MESH:D009447), melanoma (MESH:D008545), Tumor (MESH:D009369), lymph node metastasis (MESH:D008207), breast cancer (MESH:D001943), lung and ovarian cancers (MESH:D010051), -P (MESH:D002972), gastrointestinal stromal tumor (MESH:D046152), liver and prostate cancers (MESH:D011471), gastrointestinal malignancy (MESH:D005770), Lung metastasis (MESH:D009362), leukemia (MESH:D007938), lung cancer (MESH:D008175), Tumorigenesis (MESH:D063646), T (MESH:D001260), tumorigenic (MESH:D002471), liver cancer (MESH:D006528), GC (MESH:D013274), esophageal cancer (MESH:D004938), colon cancer (MESH:D015179), mitochondrial damage (MESH:D028361), pancreatic cancer (MESH:D010190)
- **Chemicals:** ROS (MESH:D017382), DMSO (MESH:D004121), penicillin (MESH:D010406), H&amp;E (MESH:D006371), Erastin (MESH:C477224), GSH (MESH:D005978), PBS (MESH:D007854), glutaraldehyde (MESH:D005976), CO2 (MESH:D002245), hematoxylin (MESH:D006416), gemcitabine (MESH:D000093542), osmium tetroxide (MESH:D009993), nitrogen (MESH:D009584), puromycin (MESH:D011691), streptomycin (MESH:D013307), PVDF (MESH:C024865), Ser (MESH:D012694), 10654-1-AP (-), polybrene (MESH:D006583), crystal violet (MESH:D005840), MDA (MESH:D008315), trastuzumab (MESH:D000068878), paclitaxel (MESH:D017239), PMSF (MESH:D010664), glutamine (MESH:D005973), paraformaldehyde (MESH:C003043), ferrostatin-1 (MESH:C573944), AP (MESH:D000667), DAPI (MESH:C007293), eosin (MESH:D004801), SDS (MESH:D012967), iron (MESH:D007501), CCK-8 (MESH:D012844), MG132 (MESH:C072553), 5-FU (MESH:D005472), biotin (MESH:D001710), NADPH (MESH:D009249), pentose phosphate (MESH:D010428), lipid (MESH:D008055), cisplatin (MESH:D002945)
- **Species:** Mycoplasma (genus) [taxon 2093], Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** V600E, P0017S
- **Cell lines:** GES-1 — Homo sapiens (Human), Transformed cell line (CVCL_EQ22), AGS — Homo sapiens (Human), Gastric adenocarcinoma, Cancer cell line (CVCL_0139), CCK-8 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_2873), HGC-27 — Homo sapiens (Human), Gastric carcinoma, Cancer cell line (CVCL_1279), HEK-293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), MKN-45 — Homo sapiens (Human), Gastric adenocarcinoma, Cancer cell line (CVCL_0434), BALB/c — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0184)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13039117/full.md

## References

4 references — full list in the complete paper: https://tomesphere.com/paper/PMC13039117/full.md

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Source: https://tomesphere.com/paper/PMC13039117