# Recurrent SARS-CoV-2 Omicron broadly neutralizing humanized antibodies in different single human VH1-2-rearranging mouse models

**Authors:** Himanshu Batra, Sai Luo, Kevin O. Saunders, Jaclyn S. Higgins, Fanchong Jian, Jun Zhang, Md Golam Kibria, G. M. Jonaid, Qingchen J. Zhou, Amanda Eaton, Kenneth Cronin, Michael L. Mallory, Melissa Mattocks, Robert J. Edwards, Robert Parks, Esther M. Lee, Adam Yongxin Ye, Aimee Chapdelaine Williams, Geeyoun Jung, Katayoun Mansouri, S. Munir Alam, David C. Montefiori, Ming Tian, Ralph S. Baric, Yunlong Cao, Barton F. Haynes, Bing Chen, Frederick W. Alt

PMC · DOI: 10.1073/pnas.2537053123 · Proceedings of the National Academy of Sciences of the United States of America · 2026-03-23

## TL;DR

Researchers developed a new mouse model that produces human-like antibodies to neutralize SARS-CoV-2 Omicron variants more effectively than previous models.

## Contribution

A new humanized mouse model with longer CDR3s was developed, producing more potent antibodies against SARS-CoV-2 Omicron subvariants.

## Key findings

- Antibodies from the new model neutralized Omicron variants more potently than those from the prior model.
- Both models produced antibodies that reduced viral titers in mouse models of Omicron BQ1.1.
- The new antibodies target a conserved epitope on the Omicron spike protein.

## Abstract

Mouse models that generate antibody repertoires from human gene segments that predominantly encode single antibody lineages are useful for evaluating preclinical HIV-1 vaccine strategies. One such model was used for discovery of a humanized antibody that potently neutralized SARS-CoV-2 variants through the first several Omicron variants. Here, we describe a new, related humanized mouse model that generates a different antibody repertoire. Immunization with a SARS-CoV-2 Omicron spike protein immunogen elicited related humanized antibodies from both models that potently neutralized Omicron variants, with antibodies from the new model being more potent. Both sets of new antibodies reduced Omicron BQ1.1 viral titers in mouse models. These studies validate use of such mouse models for discovery of humanized antibodies against newly evolving pathogens.

During V(D)J recombination, antibody diversity is enhanced by nontemplated junctional modifications that generate immensely diverse heavy chain (HC) and light chain (LC) complementarity-determining 3 antigen-contact regions (CDR3s). We previously developed a mouse model that generates diverse antibody repertoires by rearranging a single human VH1-2 and Vκ1-33, associated with highly diverse CDR3s generated by V(D)J recombination with mouse Ds and/or Js. Immunization of this model with SARS-CoV-2 D614G spike elicited an antibody that potently neutralized SARS-CoV-2 variants through Omicron BA.2.754. Here, we report a related mouse model in which a single VH1-2 rearranges to human D3-3 and JH6, generating diverse HC-CDR3s much longer on average than those of our prior model. Omicron BA.4/.5 spike-ferritin nanoparticle-immunization of the new model elicited four highly related humanized antibodies that potently neutralize downstream Omicron subvariants. All four antibodies had 12 AA HC-CDR3s with two aromatic amino acids that engage an epitope comprising a hydrophobic patch opened-up by early Omicron lineage mutations and conserved in subsequent variants. Immunization of our prior, shorter CDR3-based model, elicited slightly less potent neutralizing antibodies that bound the same Omicron epitope, and were similar in all other aspects to those from the long, fully human CDR3 model. One tested antibody from each set reduced lung viral titers in a mouse-adapted BQ1.1 challenge. The antibodies we describe are related in their epitope recognition to recently described antibodies from Omicron-infected humans. These studies validate the utility of single human VH- and Vκ-rearranging mice for discovering humanized antibodies that neutralize emerging pathogens.

## Linked entities

- **Genes:** Igh-V12 (immunoglobulin heavy chain (V12 family)) [NCBI Gene 111665], Pp2B-14D (Protein phosphatase 2B at 14D) [NCBI Gene 32624]
- **Diseases:** SARS-CoV-2 (MONDO:0100096)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Cd4 (CD4 antigen) [NCBI Gene 12504] {aka L3T4, Ly-4}, Thy1 (thymus cell antigen 1, theta) [NCBI Gene 21838] {aka CD90, T25, Thy-1, Thy-1.2, Thy1.1, Thy1.2}, Igh-C (immunoglobulin heavy chain constant region) [NCBI Gene 111672], Igkv4-74 (immunoglobulin kappa variable 4-74) [NCBI Gene 236047] {aka Gm10880, Gm192, IgVkai4}, Trgc1 (T cell receptor gamma, constant 1) [NCBI Gene 107573] {aka Cgamma1, Gm17004, Tcrg-C1}, ACE2 (angiotensin converting enzyme 2) [NCBI Gene 59272] {aka ACEH}, Igh-V12 (immunoglobulin heavy chain (V12 family)) [NCBI Gene 111665] {aka V>H<12, VH12}, Ba5 (bone area 5) [NCBI Gene 100035715], Cntnap1 (contactin associated protein-like 1) [NCBI Gene 53321] {aka Caspr, NCP1, Nrxn4, p190, shm}, Apc (APC, WNT signaling pathway regulator) [NCBI Gene 11789] {aka CC1, Min, mAPC}, LOC105243590 (Ig heavy chain Mem5-like) [NCBI Gene 105243590] {aka IgH, Igg1}, Igl (immunoglobulin lambda chain complex) [NCBI Gene 111519] {aka Igl-x}, Dntt (deoxynucleotidyltransferase, terminal) [NCBI Gene 21673] {aka Tdt}, Hdac3 (histone deacetylase 3) [NCBI Gene 15183], Rag2 (recombination activating gene 2) [NCBI Gene 19374] {aka Rag-2}, Ighd (immunoglobulin heavy constant delta) [NCBI Gene 380797] {aka IgD, Igh-5}, Igh-VS107 (immunoglobulin heavy chain (S107 family)) [NCBI Gene 16065] {aka IgG, IgH, VhNZA6}, Dusp12 (dual specificity phosphatase 12) [NCBI Gene 80915] {aka 1190004O14Rik, ESTM36, LMW-DSP4, T-DSP4, VH1, mVH1}, Igkv9-129 (immunoglobulin kappa variable 9-129) [NCBI Gene 692182], Ace2 (angiotensin converting enzyme 2) [NCBI Gene 70008] {aka 2010305L05Rik}, Ptprc (protein tyrosine phosphatase receptor type C) [NCBI Gene 19264] {aka B220, CD45R, Cd45, L-CA, Ly-5, Lyt-4}, Bcr (BCR activator of RhoGEF and GTPase) [NCBI Gene 110279] {aka 5133400C09Rik, mKIAA3017}, Igh (immunoglobulin heavy chain complex) [NCBI Gene 111507], S (surface glycoprotein) [NCBI Gene 43740568] {aka spike glycoprotein}
- **Diseases:** hemorrhage (MESH:D006470), infection (MESH:D007239), ES (MESH:D012512), weight loss (MESH:D015431), Cancer (MESH:D009369), Lung discoloration (MESH:D014075), lung (MESH:D008171)
- **Chemicals:** xylazine (MESH:D014991), CH65 (-), Sepharose (MESH:D012685), Amino acids (MESH:D000596), PBS (MESH:D007854), Leucine (MESH:D007930), cysteine (MESH:D003545), SDS (MESH:D012967), Alexa Fluor 647 (MESH:C569686), BA.1 (MESH:C006646), Polyinosinic-polycytidylic acid (MESH:D011070)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049], Vesicular stomatitis virus (species) [taxon 11276], Human immunodeficiency virus 1 (no rank) [taxon 11676], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Homo sapiens (human, species) [taxon 9606], Helicobacter pylori (species) [taxon 210]
- **Mutations:** S10 A, P373, S11, S373P, A435S, S14 A, alanine substitution of Phe101 and Trp102, S11A, D614G
- **Cell lines:** Huh-7 — Homo sapiens (Human), Adult hepatocellular carcinoma, Cancer cell line (CVCL_0336), 293 T — Homo sapiens (Human), Transformed cell line (CVCL_0063), Expi293F — Homo sapiens (Human), Transformed cell line (CVCL_D615), AB2-122 — Homo sapiens (Human), Bare lymphocyte syndrome type 2, Transformed cell line (CVCL_B7K5)

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13037937/full.md

## References

69 references — full list in the complete paper: https://tomesphere.com/paper/PMC13037937/full.md

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Source: https://tomesphere.com/paper/PMC13037937