# GFAP+ FOXF2+ ependymal cells promote blood–brain barrier repair via DLL4–NOTCH signaling after neural injury

**Authors:** Qi Xie, Hui Lu, Xiaoman Wang, Siya Wu, Qian He, Mengqi Yuan, Shuang Zhang, Linlin Hu, Changxiong Gong, Xiaofeng Cheng, Yiliang Fang, Zhaoyou Meng, Yilong Wang, Sen Lin, Qingwu Yang

PMC · DOI: 10.1073/pnas.2520352123 · Proceedings of the National Academy of Sciences of the United States of America · 2026-03-24

## TL;DR

A specific type of ependymal cell helps repair the blood-brain barrier after injury by using DLL4-NOTCH signaling, offering a new therapeutic target for neural injury recovery.

## Contribution

Identifies GFAP+ FOXF2+ ependymal cells as key mediators of blood–brain barrier repair via DLL4–NOTCH signaling after neural injury.

## Key findings

- GFAP+ FOXF2+ ependymal cells selectively expand in the subventricular zone after neural injury.
- Conditional deletion of Foxf2 in these cells leads to impaired blood–brain barrier integrity.
- Exosomal DLL4 secretion by GFAP+ FOXF2+ ependymal cells activates NOTCH signaling to restore barrier function.

## Abstract

Ependymal cells (EP) in the adult ventricular-subventricular zone (V-SVZ) are recognized for diverse functions beyond cerebrospinal fluid (CSF) dynamics, yet their identity, specialization, and roles in niche interactions and postinjury repair remain poorly understood. Our study identifies distinct injury-responsive ependymal subpopulations, highlighting GFAP+ FOXF2+ cells as a pivotal subset following stroke. Conditional deletion of Foxf2 in GFAP+ EP results in markedly aggravated blood–brain barrier (BBB) disruption, demonstrating their indispensable role in BBB repair mediated through DLL4-dependent Notch signaling. These findings underscore GFAP+ FOXF2+ EP as a compelling therapeutic target for enhancing BBB integrity in the context of neural injury.

Ependymal cells in the adult ventricular-subventricular zone are increasingly recognized for functions extending beyond cerebrospinal fluid dynamics; however, their identity and functional specialization remain incompletely understood. While ependymal cells (EP) have been implicated in interactions with the stem cell niche and the vasculature, their role in repair processes following neural injury remains elusive. In this study, we employed region-specific single-cell transcriptomics of the subventricular zone (SVZ) and ipsilesional peri-infarct territory in mice to identify a distinct subpopulation of GFAP+ FOXF2+ EP that selectively expand within the SVZ after neural injury. Notably, these cells were absent from other brain regions. Immunohistochemical validation revealed characteristic ependymal features, including typical pinwheel architecture and expression of Foxj1 and β-catenin. Furthermore, the absence of the proliferation marker Ki67 and the resistance of this subpopulation to Ara-C-mediated ablation indicate that these cells do not possess proliferative properties. Conditional deletion of Foxf2 in GFAP+ cells led to impaired endothelial junction integrity and increased blood–brain barrier (BBB) permeability. In contrast, overexpression of Foxf2 via GFAP promoter-driven adeno-associated virus delivery enhanced vascular repair and facilitated functional recovery. Mechanistically, these GFAP+ FOXF2+ EP secrete exosomal DLL4, which was associated with enhanced NOTCH pathway activity and restoration of BBB function. While the mechanism linking this limited cell population to the broad reparative effect, particularly the complete signaling amplification cascade, remains to be fully elucidated, these findings identify a subset of EP that contributes to BBB repair.

## Linked entities

- **Genes:** GFAP (glial fibrillary acidic protein) [NCBI Gene 2670], FOXF2 (forkhead box F2) [NCBI Gene 2295], FOXF2 (forkhead box F2) [NCBI Gene 2295], FOXJ1 (forkhead box J1) [NCBI Gene 2302], ctnnb1.S (catenin beta 1 S homeolog) [NCBI Gene 380441], DLL4 (delta like canonical Notch ligand 4) [NCBI Gene 54567], Notch (neurogenic locus notch homolog) [NCBI Gene 100616083]
- **Chemicals:** Ara-C (PubChem CID 6253)
- **Diseases:** stroke (MONDO:0005098)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Matk (megakaryocyte-associated tyrosine kinase) [NCBI Gene 17179] {aka CHK, HYL, Ntk, p56ntk}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}, Sox2 (SRY (sex determining region Y)-box 2) [NCBI Gene 20674] {aka Sox-2, lcc, ysb}, Foxf2 (forkhead box F2) [NCBI Gene 14238] {aka FREAC2, Fkh20, LUN}, FOXF2 (forkhead box F2) [NCBI Gene 2295] {aka FKHL6, FREAC-2, FREAC2}, Cd44 (CD44 antigen) [NCBI Gene 12505] {aka HERMES, Ly-24, Pgp-1}, Hba-a1 (hemoglobin alpha, adult chain 1) [NCBI Gene 15122] {aka Hba, Hba1, Hbat1}, Pip4k2b (phosphatidylinositol-5-phosphate 4-kinase, type II, beta) [NCBI Gene 108083] {aka PI5P4Kbeta, Pip5k2b, c11}, Aif1 (allograft inflammatory factor 1) [NCBI Gene 11629] {aka AIF-1, D17H6S50E, G1, Iba1}, Cd24a (CD24a antigen) [NCBI Gene 12484] {aka Cd24, HSA, Ly-52, nectadrin}, Fgfr3 (fibroblast growth factor receptor 3) [NCBI Gene 14184] {aka CD333, FR3, Fgfr-3, Flg-2, HBGFR, Mfr3}, Top2a (topoisomerase (DNA) II alpha) [NCBI Gene 21973] {aka Top-2}, Tmem212 (transmembrane protein 212) [NCBI Gene 208613] {aka E030011K20Rik, Gm564}, Src (src proto-oncogene, non-receptor tyrosine kinase) [NCBI Gene 20779] {aka pp60c-src}, Aqp4 (aquaporin 4) [NCBI Gene 11829] {aka WCH4}, Hspa1b (heat shock protein family A (Hsp70) member 1B) [NCBI Gene 15511] {aka HSP70B1, Hsp70, Hsp70-1, Hsp70.1, hsp68}, Ms4a7 (membrane-spanning 4-domains, subfamily A, member 7) [NCBI Gene 109225] {aka 9130422I10Rik, A430103C15Rik, CD20l4, CFFMA}, Pecam1 (platelet/endothelial cell adhesion molecule 1) [NCBI Gene 18613] {aka Cd31, PECAM-1, Pecam}, Sox10 (SRY (sex determining region Y)-box 10) [NCBI Gene 20665] {aka Dom, Sox21, gt}, Mog (myelin oligodendrocyte glycoprotein) [NCBI Gene 17441] {aka B230317G11Rik}, Gfap (glial fibrillary acidic protein) [NCBI Gene 14580], Notch3 (notch 3) [NCBI Gene 18131] {aka N3, hpbk}, FOXJ1 (forkhead box J1) [NCBI Gene 2302] {aka CILD43, FKHL13, HFH-4, HFH4}, Ocln (occludin) [NCBI Gene 18260] {aka Ocl}, Pdgfrb (platelet derived growth factor receptor, beta polypeptide) [NCBI Gene 18596] {aka CD140b, PDGFR-1, Pdgfr}, Cdh5 (cadherin 5) [NCBI Gene 12562] {aka 7B4, Cd144, VE-Cad, VECD, VEcad, Vec}, GFAP (glial fibrillary acidic protein) [NCBI Gene 2670] {aka ALXDRD}, Acta2 (actin alpha 2, smooth muscle, aorta) [NCBI Gene 11475] {aka 0610041G09Rik, Actvs, SMAalpha, SMalphaA, a-SMA, alphaSMA}, Olig2 (oligodendrocyte transcription factor 2) [NCBI Gene 50913] {aka Bhlhb1, Olg-2, Oligo2, RK17, bHLHe19}, Spp1 (secreted phosphoprotein 1) [NCBI Gene 20750] {aka 2AR, Apl-1, BNSP, BSPI, Bsp, ETA-1}, Rgs5 (regulator of G-protein signaling 5) [NCBI Gene 19737] {aka 1110070A02Rik}, Hsp86-ps2 (heat shock protein 86, pseudogene 2) [NCBI Gene 111042] {aka 86kDa, Hsp86-3, Hsp90}, Mapk1 (mitogen-activated protein kinase 1) [NCBI Gene 26413] {aka 9030612K14Rik, ERK, Erk2, MAPK2, PRKM2, Prkm1}, Syt1 (synaptotagmin I) [NCBI Gene 20979] {aka G630098F17Rik, SytI}, Ascl1 (achaete-scute family bHLH transcription factor 1) [NCBI Gene 17172] {aka ASH1, Mash1, bHLHa46}, Ctss (cathepsin S) [NCBI Gene 13040] {aka Cats}, C1qc (complement component 1, q subcomponent, C chain) [NCBI Gene 12262] {aka Adib, C1qg, Ciqc}, Siglech (sialic acid binding Ig-like lectin H) [NCBI Gene 233274] {aka 6430529G09Rik, Siglec-H}, Tmem119 (transmembrane protein 119) [NCBI Gene 231633] {aka obif}, Fezf2 (Fez family zinc finger 2) [NCBI Gene 54713] {aka Fez, Fezl, Zfp312}, Ctnnb1 (catenin beta 1) [NCBI Gene 12387] {aka Bfc, Catnb, Mesc}, Dll4 (delta like canonical Notch ligand 4) [NCBI Gene 54485] {aka Delta4}, Notch1 (notch 1) [NCBI Gene 18128] {aka 9930111A19Rik, Mis6, N1, Tan1, lin-12}, Cldn5 (claudin 5) [NCBI Gene 12741] {aka MBEC1, Tmvcf}, Clic6 (chloride intracellular channel 6) [NCBI Gene 209195] {aka 5730466J16Rik, CLIC1L}, Tjp1 (tight junction protein 1) [NCBI Gene 21872] {aka ZO1}, Dcx (doublecortin) [NCBI Gene 13193] {aka Dbct}, Mki67 (antigen identified by monoclonal antibody Ki 67) [NCBI Gene 17345] {aka D630048A14Rik, Ki-67, Ki67}, DLL4 (delta like canonical Notch ligand 4) [NCBI Gene 54567] {aka AOS6, delta4, hdelta2}, Foxj1 (forkhead box J1) [NCBI Gene 15223] {aka FKHL-13, HFH-4, Hfh4}, Cd3e (CD3 antigen, epsilon polypeptide) [NCBI Gene 12501] {aka CD3, CD3epsilon, T3e}, S100b (S100 protein, beta polypeptide, neural) [NCBI Gene 20203] {aka Bpb}
- **Diseases:** spinal cord injury (MESH:D013119), Alzheimer's Disease (MESH:D000544), EP (MESH:D002292), neurological deficits (MESH:D009461), neurodegenerative disease (MESH:D019636), thrombosis (MESH:D013927), edema (MESH:D004487), neurological impairment (MESH:D009422), EC (MESH:D005955), TBI (MESH:D000070642), BBB (MESH:C536830), impaired motor function (MESH:D000068079), infected (MESH:D007239), neural injury (MESH:D014947), ischemic stroke (MESH:D002544), weight gain (MESH:D015430), MCAO (MESH:D020244), vascular dysfunction (MESH:D002561), Stroke (MESH:D020521), cerebral ischemia (MESH:D002545), I/R (MESH:C580424), viral infection (MESH:D014777), MG (MESH:D009157), vascular injury (MESH:D057772), infarct (MESH:D007238), PC (MESH:D015324), intracranial hemorrhage (MESH:D020300), brain injury (MESH:D001930), neurological damage (MESH:D020196)
- **Chemicals:** FAD (MESH:D005182), Ara-C (MESH:D003561), CKO (-), 2,3,5-Triphenyltetrazolium Chloride (MESH:C009591), PNAS (MESH:D020135)
- **Species:** adeno-associated virus 2 (no rank) [taxon 10804], Adeno-associated virus (species) [taxon 272636], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** E1 — Mus musculus (Mouse), Malignant neoplasms of the mouse mammary gland, Cancer cell line (CVCL_L871)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13037844/full.md

## References

56 references — full list in the complete paper: https://tomesphere.com/paper/PMC13037844/full.md

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Source: https://tomesphere.com/paper/PMC13037844