# Development and Evaluation of Benzofuran Oxoacetic Acid Compounds as EPAC1 Activators

**Authors:** David Morgan, Jolanta Wiejak, Frederick G. Powell, Chiara Fitzpatrick, Stephen J. Yarwood, Graeme Barker

PMC · DOI: 10.1021/acs.jmedchem.5c02974 · 2026-03-14

## TL;DR

This paper introduces new benzofuran compounds that activate EPAC1, a protein involved in fibrosis, and shows their potential as antifibrotic agents with better tolerability than existing drugs.

## Contribution

The study presents benzofuran oxoacetic acids as novel EPAC1 activators with antifibrotic potential and favorable tolerability.

## Key findings

- Several benzofuran analogues selectively activated EPAC1 in cells without activating EPAC2 or protein kinase A.
- The compounds inhibited TGF-β1-induced fibroblast-to-myofibroblast transition with midmicromolar potency.
- Some compounds attenuated IL-6/STAT3 signaling in endothelial cells, suggesting anti-inflammatory potential.

## Abstract

Exchange protein
directly activated by cAMP 1 (EPAC1) modulates
Rap signaling and fibrosis. We report benzofuran oxoacetic acids as
non-nucleotide EPAC1 agonists. Convergent synthesis delivered C2-diversified
analogues (overall yields ≈ 3–7%). Fluorescent competition
at isolated CNBDs mapped isoform engagement: several analogues favored
EPAC1 (e.g., DM244, DM357, and DM408), DM312 favored EPAC2, and small C2 changes tuned bias.
In cells, EPAC1-transfected U2OS assays showed significant Rap1-GTP
increases for DM243, DM244, and DM245, with no activation in EPAC2 cells and no detectable protein kinase
A activity. In disease-relevant contexts, the series attenuated IL-6/STAT3
signaling in human umbilical vascular endothelial cells and inhibited
TGF-β1-induced fibroblast-to-myofibroblast transition (αSMA,
Collagen I) with midmicromolar potencies; known drugs, SB525334 and nintedanib, remained more potent, yet nintedanib
was markedly more cytotoxic. Across assays, some binding-phenotype
disconnects emerged, plausibly reflecting exposure, signaling bias,
and cell-context effects. Overall, benzofuran oxoacetic acids provide
EPAC-pathway probes with a favorable tolerability window and scope
for potency optimization as antifibrotics.

## Linked entities

- **Genes:** RAPGEF3 (Rap guanine nucleotide exchange factor 3) [NCBI Gene 10411], RAPGEF4 (Rap guanine nucleotide exchange factor 4) [NCBI Gene 11069], RAP1A (RAP1A, member of RAS oncogene family) [NCBI Gene 5906], IL6 (interleukin 6) [NCBI Gene 3569], STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774], TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040], ACTA1 (actin alpha 1, skeletal muscle) [NCBI Gene 58]
- **Proteins:** RAPGEF3 (Rap guanine nucleotide exchange factor 3), RAPGEF4 (Rap guanine nucleotide exchange factor 4), RAP1A (RAP1A, member of RAS oncogene family)
- **Chemicals:** SB525334 (PubChem CID 9967941), nintedanib (PubChem CID 135423438)
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** PDE4A (phosphodiesterase 4A) [NCBI Gene 5141] {aka DPDE2, PDE4, PDE46}, IL6R (interleukin 6 receptor) [NCBI Gene 3570] {aka CD126, HIES5, IL-1Ra, IL-6R, IL-6R-1, IL-6RA}, Rap1a (Rap1a member of RAS oncogene family) [NCBI Gene 109905] {aka G-22K, Krev-1, Rap1}, LRPAP1 (LDL receptor related protein associated protein 1) [NCBI Gene 4043] {aka A2MRAP, A2RAP, HBP44, MYP23, RAP, alpha-2-MRAP}, Rapgef3 (Rap guanine nucleotide exchange factor (GEF) 3) [NCBI Gene 223864] {aka 2310016P22Rik, 9330170P05Rik, Epac, Epac1}, RASGRF1 (Ras protein specific guanine nucleotide releasing factor 1) [NCBI Gene 5923] {aka CDC25, CDC25L, GNRP, GRF1, GRF55, H-GRF55}, SOCS3 (suppressor of cytokine signaling 3) [NCBI Gene 9021] {aka ATOD4, CIS3, Cish3, SOCS-3, SSI-3, SSI3}, VASP (vasodilator stimulated phosphoprotein) [NCBI Gene 7408], RALGDS (ral guanine nucleotide dissociation stimulator) [NCBI Gene 5900] {aka RGDS, RGF, RalGEF}, Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, RASD1 (ras related dexamethasone induced 1) [NCBI Gene 51655] {aka AGS1, DEXRAS1, MGC:26290}, RAP1A (RAP1A, member of RAS oncogene family) [NCBI Gene 5906] {aka C21KG, G-22K, KREV-1, KREV1, RAP1, SMGP21}, Rapgef4 (Rap guanine nucleotide exchange factor (GEF) 4) [NCBI Gene 56508] {aka 1300003D15Rik, 5730402K07Rik, 6330581N18Rik, EPAC 2, Epac-2, Epac2}, Stat3 (signal transducer and activator of transcription 3) [NCBI Gene 20848] {aka 1110034C02Rik, Aprf}, RAPGEF3 (Rap guanine nucleotide exchange factor 3) [NCBI Gene 10411] {aka CAMP-GEFI, EPAC, EPAC1, HSU79275, bcm910}, Socs3 (suppressor of cytokine signaling 3) [NCBI Gene 12702] {aka Cis3, Cish3, EF-10, Ef10, SSI-3, Ssi3}, Tgfb1 (transforming growth factor, beta 1) [NCBI Gene 59086] {aka Tgfb}, RAPGEF4 (Rap guanine nucleotide exchange factor 4) [NCBI Gene 11069] {aka CAMP-GEFII, CGEF2, EPAC, EPAC 2, EPAC2, Nbla00496}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, MAPK1 (mitogen-activated protein kinase 1) [NCBI Gene 5594] {aka ERK, ERK-2, ERK2, ERT1, MAPK2, NS13}, ARHGEF2 (Rho/Rac guanine nucleotide exchange factor 2) [NCBI Gene 9181] {aka GEF, GEF-H1, GEFH1, LFP40, Lfc, NEDMHM}, MTG1 (mitochondrial ribosome associated GTPase 1) [NCBI Gene 92170] {aka GTP, GTPBP7}, CAMP (cathelicidin antimicrobial peptide) [NCBI Gene 820] {aka CAP-18, CAP18, CRAMP, FALL-39, FALL39, HSD26}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, Vasp (vasodilator-stimulated phosphoprotein) [NCBI Gene 22323], IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, Rap1b (RAS related protein 1b) [NCBI Gene 215449] {aka 2810443E11Rik}, ACTA1 (actin alpha 1, skeletal muscle) [NCBI Gene 58] {aka ACTA, ASMA, CFTD, CFTD1, CFTDM, CMYO2A}
- **Diseases:** inflammation (MESH:D007249), Dean-Stark (MESH:C566695), fibrosis (MESH:D005355), FMT (MESH:D008579), DM (MESH:D009223), Cytotoxic (MESH:D064420), heart disease (MESH:D006331)
- **Chemicals:** d 4 (MESH:C024064), SB525334 (MESH:C521813), polyacrylamide (MESH:C016679), H2O (MESH:D014867), silica (MESH:D012822), aluminum (MESH:D000535), rolipram (MESH:D020889), K2CO3 (MESH:C037593), ammonium acetate (MESH:C018824), benzyl bromide (MESH:C038682), CHMe 2 (MESH:C405203), Ar (MESH:D001128), N (MESH:D009584), pitofenone (MESH:C015454), cyclic nucleotide (MESH:D009712), Hoechst 33342 (MESH:C017807), nucleotide (MESH:D009711), THF (MESH:C018674), 5-bromo-2-hydroxybenzaldehyde (MESH:C000600850), 4-Hydroxybenzaldehyde (MESH:C011483), kanamycin (MESH:D007612), KMnO4 (MESH:D011196), menthol (MESH:D008610), dibenzylideneacetone (MESH:C533260), tiaprofenic acid (MESH:C021270), Pr (MESH:D011221), HCl (MESH:D006851), amine (MESH:D000588), LiOH (MESH:C028467), amino alcohols (MESH:D000605), forskolin (MESH:D005576), Petroleum ether (MESH:C004544), Ascorbic Acid (MESH:D001205), NaHCO3 (MESH:D017693), CO2 (MESH:D002245), Methanol (MESH:D000432), N-bromosuccinimide (MESH:D001974), Nitrile (MESH:D009570), ammonium hydroxide (MESH:D064753), CH2Cl2 (MESH:D008752), DMSO (MESH:D004121), PBS (MESH:D007854), F/R (MESH:D005605), OH (MESH:C031356), guanosine triphosphate (MESH:D006160), phenol (MESH:D019800), Glutathione (MESH:D005978), carbamate (MESH:D002219), 7a (MESH:C040548), benzaldehydes (MESH:D001547), DIPEA (MESH:C027070), Triethylamine (MESH:C016162), acetonitrile (MESH:C032159), NBS (MESH:D009556), CHO (MESH:C034482), Na (MESH:D012964), triethylsilane (MESH:C512918), ester (MESH:D004952), 1,1'-bis(diphenylphosphino)ferrocene (MESH:C519379), Fluorine (MESH:D005461)
- **Species:** Escherichia coli (E. coli, species) [taxon 562], Rattus norvegicus (brown rat, species) [taxon 10116], Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** U20S — Homo sapiens (Human), Osteosarcoma, Cancer cell line (CVCL_0042), BL21 Star (DE3 — Canis lupus familiaris (Dog), Canine mammary carcinoma, Cancer cell line (CVCL_B7H9)

## Figures

20 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13036782/full.md

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Source: https://tomesphere.com/paper/PMC13036782