# Biological and Genomic Characterization of Two Astaxanthin-Producing Paracoccus marcusii Isolates as a Potential Source for Food Additives

**Authors:** Keeman Lee, Eun Jeong Park, Jee Eun Han, Soojin Lim, Tae Seon Cha, Seunghui Lee, Seojeong Choi, Yejin Seo, Seon Young Park, Ji Hyung Kim

PMC · DOI: 10.4014/jmb.2512.12023 · 2026-03-26

## TL;DR

Two new strains of Paracoccus marcusii are found to produce astaxanthin, a valuable antioxidant pigment, making them promising for natural food and cosmetic additives.

## Contribution

The study provides the first genomic and biochemical characterization of two new P. marcusii isolates as potential astaxanthin producers.

## Key findings

- Both GCUPA1 and GCUPA3 strains produce astaxanthin as their main carotenoid.
- Genome analysis shows intact biosynthetic gene clusters for astaxanthin production.
- The isolates show strong antioxidant activity and potential for sustainable production.

## Abstract

Astaxanthin (AST), a carotenoid pigment, has garnered significant interest due to its potent antioxidant, anti-inflammatory, and antibacterial properties, indicating that it is a valuable natural additive in the aquaculture, nutraceutical, and cosmetic industries. To date, Paracoccus spp., a known astaxanthin-producing bacteria, has emerged as a potential microbial source of substantial AST production yield and biosynthetic capabilities. This study reports the biochemical and genomic characterization of two Paracoccus isolates, GCUPA1 and GCUPA3, focusing on their potential as sources of natural carotenoids. Both strains were characterized by distinctive red-orange pigmentation and identified as P. marcusii based on 16S rRNA analysis. Spectroscopic and chromatographic analyses were performed to identify the predominant carotenoids, and the results established AST as the predominant carotenoid in both strains. The extracted pigments exhibited significant antioxidant activity in the 2,2′-azino-bis (3-ethylbenzothiazoline-6-sulfonic acid) (ABTS) assay, indicating their potential to reduce oxidative stress. Genome phylogeny revealed that both strains were closely related to the carotenoid-producing strain, P. marcusii CP157, confirming their taxonomic position within the species. Notably, the complete genome sequences revealed intact carotenoid biosynthetic gene clusters (BGCs) that encode all essential enzymes (crtWZYIBE) required for astaxanthin synthesis from isoprenoid precursors, with high nucleotide identity between strains. These findings establish P. marcusii GCUPA1 and GCUPA3 as a potential cell factory for sustainable astaxanthin production and suggest significant advantages in terms of processing efficiency and production economics compared to existing microbial systems.

## Linked entities

- **Chemicals:** astaxanthin (PubChem CID 5281224), ABTS (PubChem CID 35688)
- **Species:** Paracoccus marcusii (taxon 59779), Mus musculus (taxon 10090)

## Full-text entities

- **Diseases:** V. vulnificus infection (MESH:C536348), inflammatory (MESH:D007249), gram (MESH:D016908), Cytotoxicity (MESH:D064420), fibrosarcoma (MESH:D005354)
- **Chemicals:** ciprofloxacin (MESH:D002939), ectoine (MESH:C045628), AST (MESH:C005948), fluoroquinolones (MESH:D024841), peptides (MESH:D010455), methanol (MESH:D000432), DMSO (MESH:D004121), penicillin (MESH:D010406), amino acid (MESH:D000596), fructose (MESH:D005632), imipenem (MESH:D015378), PBS (MESH:D007854), TSA (MESH:C481298), piperacillin/tazobactam (MESH:D000077725), aminoglycosides (MESH:D000617), pyrroloquinoline quinone (MESH:D045542), sucrose (MESH:D013395), DPPH (MESH:C004931), catechol (MESH:C034221), tobramycin (MESH:D014031), carbohydrate (MESH:D002241), CO2 (MESH:D002245), Ascorbic acid (MESH:D001205), water (MESH:D014867), isopropanol (MESH:D019840), potassium persulfate (MESH:C009007), sugars (MESH:D000073893), gentamicin (MESH:D005839), glucose (MESH:D005947), HSL (MESH:C088386), NaCl (MESH:D012965), heme (MESH:D006418), Nucleotide (MESH:D009711), streptomycin (MESH:D013307), PVDF (MESH:C024865), amikacin (MESH:D000583), meropenem (MESH:D000077731), WST-8 (MESH:C476329), xylose (MESH:D014994), 2,2-Diphenyl-1-icrylhydrazyl (-), NI (MESH:D009532), nitric oxide (MESH:D009569), fatty acid (MESH:D005227), Carbon (MESH:D002244), Acetone (MESH:D000096), isoprenoid (MESH:D013729), polyketide (MESH:D061065), arabinose (MESH:D001089), Iron (MESH:D007501), inositol (MESH:D007294), gentisate (MESH:D005841), sorbitol (MESH:D013012), rhamnose (MESH:D012210), polyhydroxyalkanoate (MESH:D054813), ceftazidime (MESH:D002442), Carotenoid (MESH:D002338), IPP (MESH:C004809), alpha-tocopherol (MESH:D024502), 2,2'-azino-bis ((3-ethylbenzothiazoline-6-sulfonic acid (MESH:C002502), beta-lactam (MESH:D047090)
- **Species:** Haematococcus lacustris (species) [taxon 44745], Escherichia fergusonii (species) [taxon 564], Paracoccus (genus) [taxon 249411], Vibrio (genus) [taxon 662], Euphausiacea (krill, order) [taxon 6816], Xanthophyllomyces dendrorhous [taxon 5421], Escherichia coli (E. coli, species) [taxon 562], Paracoccus sp. Arc7-R13 (species) [taxon 2500532], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Paracoccus yeei (species) [taxon 147645], Paracoccus carotinifaciens (species) [taxon 65151], Paracoccus haeundaensis (species) [taxon 225362], Enterobacter cloacae (species) [taxon 550], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Vibrio alginolyticus (species) [taxon 663], Homo sapiens (human, species) [taxon 9606], Paracoccus marcusii (species) [taxon 59779], Staphylococcus sp. MH-1 (species) [taxon 1138283], Paracoccus sp. (in: a-proteobacteria) (species) [taxon 267], Pseudomonas (RNA similarity group I, genus) [taxon 286], Staphylococcus warneri (species) [taxon 1292], Vibrio harveyi (species) [taxon 669], CP157 [taxon 1895626], Salmonella (genus) [taxon 590], Ovis aries (domestic sheep, species) [taxon 9940]
- **Cell lines:** CP157 — Homo sapiens (Human), Embryonal rhabdomyosarcoma, Cancer cell line (CVCL_0350), ATCC 43895 — Homo sapiens (Human), Lung adenocarcinoma, Cancer cell line (CVCL_0023), ATCC 35469T — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), HT-1080 — Homo sapiens (Human), Fibrosarcoma, Cancer cell line (CVCL_0317), ATCC 13047T — Homo sapiens (Human), Transformed cell line (CVCL_5F52), ATCC 27836 — Homo sapiens (Human), Transformed cell line (CVCL_A2SB), ATCC 14126T — Homo sapiens (Human), Cri du chat syndrome, Transformed cell line (CVCL_W002)

## Figures

10 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13036509/full.md

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Source: https://tomesphere.com/paper/PMC13036509