# Human airway organoids as a versatile model to study BSL-4 virus replication and pathogenesis

**Authors:** Joo-Hee Wälzlein, Sebastian Reusch, Jenny Ospina-Garcia, Ruth Olmer, Marc A. Schneider, Laura V. Klotz, Christian Klotz, Susann Kummer

PMC · DOI: 10.1038/s41598-026-45813-6 · 2026-03-27

## TL;DR

Human airway organoids can be used to study dangerous BSL-4 viruses like Ebola in a safe and effective way.

## Contribution

Airway organoids provide a standardized human tissue model for BSL-4 virus research that is more translatable to human disease.

## Key findings

- Airway organoids replicate BSL-4 viruses effectively and mirror the cell composition of whole lung tissue.
- Organoids derived from nasal swabs offer a versatile 3D model for studying virus-host interactions and antiviral testing.
- The model allows research on infection kinetics and immune evasion in a controlled environment.

## Abstract

Research with BSL-4 viruses such as Ebola, Marburg, and Nipah presents significant challenges due to their high virulence and the stringent containment measures required. This study establishes human airway organoids as a robust model for investigating BSL-4 pathogens. In contrast to conventional cell lines, airway organoids enable investigation of virus-host interactions within a human tissue context, providing insights that are more directly translatable to human disease. We generated airway organoids from both clinical donor tissues and commercially available nasal epithelial cells and showed in comparative analyses with whole lung tissue that these organoids are comparable in terms of cell composition. Despite biological variations, airway organoids derived from different sources and donors exhibit a remarkably similar cellular make-up. We further demonstrated that organoids derived from nasal swabs can effectively replicate BSL-4 viruses. This establishes them as a standardized 3D model for broader research applications including infection kinetics, immune evasion, and tissue-specific tropism within a controlled environment. This platform provides a powerful tool for antiviral testing and studying virus-host interactions, thus helping bridge critical gaps in high containment virus research and advancing our understanding of these pathogens, bypassing some of the challenges of animal models.

The online version contains supplementary material available at 10.1038/s41598-026-45813-6.

## Linked entities

- **Diseases:** Ebola (MONDO:0005737)
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** ACE2 (angiotensin converting enzyme 2) [NCBI Gene 59272] {aka ACEH}, SNTN (sentan, cilia apical structure protein) [NCBI Gene 132203] {aka S100A1L, S100AL, sentan}, FOXJ1 (forkhead box J1) [NCBI Gene 2302] {aka CILD43, FKHL13, HFH-4, HFH4}, EFNB3 (ephrin B3) [NCBI Gene 1949] {aka EFL6, EPLG8, LERK8}, TMPRSS2 (transmembrane serine protease 2) [NCBI Gene 7113] {aka PRSS10}, EFNB2 (ephrin B2) [NCBI Gene 1948] {aka EPLG5, HTKL, Htk-L, LERK5, ephrin-B2}, MUC5AC (mucin 5AC, oligomeric mucus/gel-forming) [NCBI Gene 4586] {aka MUC5, TBM, leB, mucin}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, ITGA6 (integrin subunit alpha 6) [NCBI Gene 3655] {aka CD49f, ITGA6A, ITGA6B, JEB6, VLA-6}, SCGB1A1 (secretoglobin family 1A member 1) [NCBI Gene 7356] {aka CC10, CC16, CCPBP, CCSP, UGB, UP-1}, MUC5B (mucin 5B, oligomeric mucus/gel-forming) [NCBI Gene 727897] {aka MG1, MUC-5B, MUC5, MUC9}, KRT5 (keratin 5) [NCBI Gene 3852] {aka CK5, DDD, DDD1, EBS1, EBS2, EBS2A}
- **Diseases:** hemorrhagic (MESH:D006470), encephalitis (MESH:D004660), airway organoid infection (MESH:D007239), hemorrhagic fever (MESH:D006480), toxicity (MESH:D064420), NPC1 (MESH:D052556), respiratory illness (MESH:D012140)
- **Chemicals:** Triton-X100 (MESH:D017830), phalloidin (MESH:D010590), SYBR Green (MESH:C098022), 1xTBS (-), paraformaldehyde (MESH:C003043), DAPI (MESH:C007293), DMSO (MESH:D004121), PBS (MESH:D007854), Y-27632 (MESH:C108830), water (MESH:D014867), glycine (MESH:D005998), Tween (MESH:D011136), CO2 (MESH:D002245)
- **Species:** Ebola virus [taxon 186536], Mus musculus (house mouse, species) [taxon 10090], Ebola virus (no rank) [taxon 1570291], Homo sapiens (human, species) [taxon 9606], Marburg [taxon 186537], Nipah virus [taxon 121791], Mesocricetus auratus (golden hamster, species) [taxon 10036], Viruses (acellular root) [taxon 10239], Sus scrofa (pig, species) [taxon 9823]
- **Cell lines:** Vero E6 — Chlorocebus sabaeus (Green monkey), Spontaneously immortalized cell line (CVCL_0574), BME — Bombyx mori (Silk moth), Spontaneously immortalized cell line (CVCL_Z083)

## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13035905/full.md

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Source: https://tomesphere.com/paper/PMC13035905