# Circulatory dietary and gut-derived metabolites predict early cognitive decline

**Authors:** Emily Connell, Saber Sami, Mizanur Khondoker, Anne Marie Minihane, Matthew G. Pontifex, Michael Müller, Simon McArthur, Gwenaelle Le Gall, David Vauzour

PMC · DOI: 10.1080/19490976.2026.2649487 · Gut Microbes · 2026-03-27

## TL;DR

This study identifies gut and diet-related metabolites that could predict early signs of cognitive decline and Alzheimer's disease.

## Contribution

The study introduces a panel of metabolites that can classify early cognitive decline with moderate accuracy.

## Key findings

- Neuroprotective metabolites like choline and indole propionic acid are lower in individuals with early cognitive decline.
- Cytotoxic metabolites such as indoxyl sulfate and kynurenic acid are elevated in early cognitive decline.
- A random forest model using six metabolites achieved an AUC of 0.79 for classifying early cognitive decline.

## Abstract

A key component of disease prevention is the identification of at-risk individuals. Microbial dysbiosis in the early stages of cognitive decline and Alzheimer's disease (AD) and can modulate the levels of microbe-derived metabolites (MDM), thought to contribute to neuroinflammation, blood‒brain barrier dysfunction, and neuronal degeneration. However, the precise role of MDM in this process, as well as their potential value as risk factors, remains poorly understood.

Mass spectrometry platforms determined the serum concentration of 33 metabolites (13 tryptophan-related compounds, 15 bile acid compounds, 3 TMAO-related metabolites and 2 cresol metabolites) from cognitively healthy subjects, subjective cognitive impairment (SCI) participants and mild cognitive impairment (MCI) participants (n = 50 per group, matched for age, BMI and sex). Multiple linear regression and machine learning techniques were applied to identify a metabolite panel capable of classifying early cognitive decline. 16S rRNA amplicon sequencing was employed to identify bacterial taxa associated with these metabolic changes.

Multiple linear regression modelling, adjusted for sex, BMI, age, albumin (for its role in metabolite transport), liver and kidney function, and background diet, identified key neuroprotective metabolites, namely choline, 5-hydroxyindole acetic acid, and indole propionic acid (IPA), as lower in SCI and MCI individuals compared to healthy controls. In contrast, the cytotoxic metabolite, indoxyl sulfate, and kynurenic acid were elevated. A random forest algorithm with multiclass classification further validated these findings, highlighting six metabolites (indoxyl sulfate, choline, 5-hydroxyindole acetic acid, IPA, kynurenic acid, and kynurenine) as classifiers of early cognitive decline, achieving an area under the curve (AUC) of 0.79.

These findings suggest that MDM may serve as putative composite biomarkers of early cognitive decline, offering potential clinical relevance for metabolic risk stratification and supporting the future development of minimally invasive screening tools.

## Linked entities

- **Chemicals:** choline (PubChem CID 305), 5-hydroxyindole acetic acid (PubChem CID 1826), indole propionic acid (PubChem CID 3744), indoxyl sulfate (PubChem CID 10258), kynurenic acid (PubChem CID 3845), kynurenine (PubChem CID 846)
- **Diseases:** Alzheimer's disease (MONDO:0004975)

## Full-text entities

- **Genes:** IFNB1 (interferon beta 1) [NCBI Gene 3456] {aka IFB, IFF, IFN-beta, IFNB}, SLC17A5 (solute carrier family 17 member 5) [NCBI Gene 26503] {aka AST, ISSD, NSD, SD, SIALIN, SIASD}, GPT (glutamic--pyruvic transaminase) [NCBI Gene 2875] {aka AAT1, ALT, ALT1, GPT1, SGPT}, CCL2 (C-C motif chemokine ligand 2) [NCBI Gene 6347] {aka GDCF-2, HC11, HSMCR30, MCAF, MCP-1, MCP1}, APP (amyloid beta precursor protein) [NCBI Gene 351] {aka AAA, ABETA, ABPP, AD1, APPI, CTFgamma}, NOS2 (nitric oxide synthase 2) [NCBI Gene 4843] {aka HEP-NOS, INOS, NOS, NOS2A}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, ALB (albumin) [NCBI Gene 213] {aka FDAHT, HSA, PRO0883, PRO0903, PRO1341}, CHI3L1 (chitinase 3 like 1) [NCBI Gene 1116] {aka ASRT7, CGP-39, GP-39, GP39, HC-gp39, HCGP-3P}
- **Diseases:** diabetes mellitus (MESH:D003920), End-stage renal disease (MESH:D007676), gall bladder abnormalities (MESH:D005705), alcohol (MESH:D000437), glutamatergic hypofunction (MESH:D000309), cytotoxic (MESH:D064420), anxiety disorder (MESH:D001008), neuroinflammation (MESH:D000090862), drug dependence (MESH:D019966), neurological, psychiatric, gastrointestinal, or metabolic disorders (MESH:D001523), mood disorders (MESH:D019964), SCI (MESH:D003072), endothelial (MESH:D005642), dysfunction (MESH:D006331), chronic fatigue syndrome (MESH:D015673), learning and memory deficits (MESH:D007859), Depression (MESH:D003866), metabolic dysregulation (MESH:D021081), MDM (MESH:C536408), MCI (MESH:D060825), neural injury (MESH:D014947), anxiety (MESH:D001007), memory (MESH:D008569), neuronal damage (MESH:D009410), inflammation (MESH:D007249), diarrhea (MESH:D003967), liver disease (MESH:D008107), amyloid (MESH:C000718787), AD (MESH:D000544), brain axis dysfunction (MESH:D001927), function (MESH:D003291), gastrointestinal symptoms (MESH:D012817), dementia (MESH:D003704), uremic toxin (MESH:D006463)
- **Chemicals:** triglyceride (MESH:D014280), TMA (MESH:C071868), NMDA (MESH:D016202), Tryptophan (MESH:D014364), lipid (MESH:D008055), cresol (MESH:C077977), alcohol (MESH:D000438), IPA (MESH:C015292), Indoxyl sulfate (MESH:D007200), FDG (MESH:D019788), agarose (MESH:D012685), L-methionine-3, 3, 4, 4 d4 (-), PTFE (MESH:D011138), indole acetic acid (MESH:C030737), glycine (MESH:D005998), water (MESH:D014867), indole (MESH:C030374), glucose (MESH:D005947), Choline (MESH:D002794), flavonoid (MESH:D005419), kynurenine (MESH:D007737), cresols (MESH:D003408), carbohydrates (MESH:D002241), taurine (MESH:D013654), LPS (MESH:D008070), p-cresol sulfate (MESH:C408690), bilirubin (MESH:D001663), glutamate (MESH:D018698), Kynurenic acid (MESH:D007736), warfarin (MESH:D014859), TMAO (MESH:C005855), methanol (MESH:D000432), BAs (MESH:D001647), Acetylcholine (MESH:D000109), serotonin (MESH:D012701), quinolinic acid (MESH:D017378), 5-hydroxyindole acetic acid (MESH:D006897), p-cresol (MESH:C032538), creatinine (MESH:D003404), p-toluenesulfonic acid (MESH:C029501)
- **Species:** Homo sapiens (human, species) [taxon 9606], Lachnoclostridium (genus) [taxon 1506553], gut metagenome (species) [taxon 749906], Turicibacter (genus) [taxon 191303], Lachnospira eligens (species) [taxon 39485], Anaerostipes (genus) [taxon 207244], Mediterraneibacter gnavus (species) [taxon 33038], Mus musculus (house mouse, species) [taxon 10090], Bacteroides (genus) [taxon 816], Mediterraneibacter torques (species) [taxon 33039], Oscillibacter (genus) [taxon 459786], Clostridium (genus) [taxon 1485], Bacillota (clostridial firmicutes, phylum) [taxon 1239]
- **Mutations:** R2Y, Q2, R2X, (AUC) of 0, 2 X

## Full text

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## Figures

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## References

111 references — full list in the complete paper: https://tomesphere.com/paper/PMC13034628/full.md

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Source: https://tomesphere.com/paper/PMC13034628