# Er-Chen Decoction ameliorates metabolic dysfunction–associated steatotic liver disease via gut microbiota-barrier axis-driven hepatic metabolic reprogramming

**Authors:** Kanlin Yang, Yueli Huang, Linze Gu, Jieyuan Li, Yongjie Ma, Pengxin Gao, Wenting Qiu, Kundong Liu, Yaxing Zhang, Haimei Liu, Jiean Xu, Jinwen Xu, Tejin Liu

PMC · DOI: 10.3389/fmicb.2026.1768664 · Frontiers in Microbiology · 2026-03-10

## TL;DR

Er-Chen Decoction improves liver disease by boosting gut bacteria that produce compounds protecting the gut barrier and reducing liver fat.

## Contribution

ECD modulates gut microbiota to increase indole production, which activates AHR signaling and reverses hepatic steatosis via epigenetic reprogramming.

## Key findings

- ECD treatment improved hepatic steatosis, insulin resistance, and hyperlipidemia in mice.
- ECD increased Bifidobacterium and Lactobacillus, and elevated indole metabolites like indoleacrylic acid.
- Indoles activated AHR, strengthened gut barrier, and reduced LPS, leading to epigenetic silencing of CIDEA and reduced liver fat.

## Abstract

Metabolic dysfunction-associated steatotic liver disease (MASLD) constitutes a critical global health challenge, with gut-liver axis dysfunction and metabolic endotoxemia serving as key drivers. The traditional Chinese medicinal formula Er-Chen Decoction (ECD) has proven effective in treating metabolic disorders, yet the specific mechanisms by which it modulates gut-liver crosstalk have not been fully elucidated.

A mouse model of MASLD was established via a high-fat diet (HFD). The therapeutic effects of ECD were evaluated using the glucagon-like peptide-1 (GLP-1) receptor agonist semaglutide (SE) as a positive control. A comprehensive analysis of the underlying mechanisms of ECD treatment was conducted by integrating fecal metagenomic sequencing, untargeted serum metabolomic profiling, hepatic transcriptomic analysis, and molecular biology assays.

Treatment with ECD markedly ameliorated hepatic steatosis, insulin resistance, and hyperlipidemia, demonstrating a therapeutic efficacy comparable to that of SE. Fecal metagenomic analysis indicated that whereas SE predominantly enriched the genus Akkermansia, the relative abundance of Bifidobacterium and Lactobacillus was markedly and specifically elevated following ECD treatment. Serum metabolomic profiling revealed that ECD specifically activated the tryptophan-indole metabolic pathway, as evidenced by elevated concentrations of indoleacrylic acid and indole-3-acetic acid. Correlation analyses established a strong positive correlation between these indole derivatives and the bacterial genera enriched by ECD. Mechanistically, our findings suggest that elevated indoles activate the aryl hydrocarbon receptor (AHR) in the colon, upregulating tight junction proteins ZO-1 and Occludin and restoring intestinal barrier integrity, thereby significantly reducing serum lipopolysaccharide (LPS) levels. In hepatic tissue, the diminished LPS influx alleviated the suppression of DNA methyltransferase 3B (DNMT3B), thereby promoting the epigenetic silencing of the lipid droplet fusion protein CIDEA and inhibiting pathological hepatic lipogenesis.

Our findings elucidate a novel mechanism through which ECD may ameliorate MASLD via the distinctive “gut microbiota-indole-barrier” axis. In contrast to SE, ECD modulates gut microbiota composition to boost indole production and subsequently activate AHR signaling. This activation inhibits endotoxin translocation and induces hepatic DNMT3B-mediated epigenetic reprogramming to reverse hepatic steatosis. These results offer scientific evidence supporting the potential of ECD as an effective therapeutic strategy for MASLD.

## Linked entities

- **Genes:** DNMT3B (DNA methyltransferase 3 beta) [NCBI Gene 1789], CIDEA (cell death inducing DFFA like effector a) [NCBI Gene 1149], TJP1 (tight junction protein 1) [NCBI Gene 7082], si:ch73-61d6.3 (uncharacterized si:ch73-61d6.3) [NCBI Gene 103182021], AHR (aryl hydrocarbon receptor) [NCBI Gene 196]
- **Proteins:** GCG (glucagon), DNMT3B (DNA methyltransferase 3 beta), CIDEA (cell death inducing DFFA like effector a), TJP1 (tight junction protein 1), si:ch73-61d6.3 (uncharacterized si:ch73-61d6.3), AHR (aryl hydrocarbon receptor)
- **Chemicals:** indoleacrylic acid (PubChem CID 15030923), indole-3-acetic acid (PubChem CID 802)
- **Diseases:** metabolic dysfunction-associated steatotic liver disease (MONDO:0013209), MASLD (MONDO:0013209)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Cidea (cell death-inducing DNA fragmentation factor, alpha subunit-like effector A) [NCBI Gene 12683], Ahr (aryl-hydrocarbon receptor) [NCBI Gene 11622] {aka Ah, Ahh, Ahre, In, bHLHe76}, Dnmt3b (DNA methyltransferase 3B) [NCBI Gene 13436] {aka MmuIIIB}, Tjp1 (tight junction protein 1) [NCBI Gene 21872] {aka ZO1}, Ocln (occludin) [NCBI Gene 18260] {aka Ocl}
- **Diseases:** MASLD (MESH:D008107), gut-liver axis dysfunction (MESH:D017093), hepatic steatosis (MESH:D005234), hyperlipidemia (MESH:D006949), Metabolic dysfunction (MESH:D008659), metabolic endotoxemia (MESH:D019446), associated (MESH:D018886), insulin resistance (MESH:D007333)
- **Chemicals:** LPS (MESH:D008070), indole-3-acetic acid (MESH:C030737), indole (MESH:C030374), indoles (MESH:D007211), indoleacrylic acid (MESH:C001446), tryptophan (MESH:D014364), fat (MESH:D005223), ECD (-)
- **Species:** Lactobacillus (genus) [taxon 1578], Mus musculus (house mouse, species) [taxon 10090]

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13033753/full.md

## References

72 references — full list in the complete paper: https://tomesphere.com/paper/PMC13033753/full.md

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Source: https://tomesphere.com/paper/PMC13033753