# Integrative multi-omics analysis reveals probiotic-induced microbiota shifts in women with gestational diabetes

**Authors:** Xiaohua Su, Jindi Yang, Zhen Le, Jingwen Xiao, Daoyan Zhao

PMC · DOI: 10.3389/fcimb.2026.1782744 · Frontiers in Cellular and Infection Microbiology · 2026-03-16

## TL;DR

This study shows that probiotics can improve gut health and insulin sensitivity in women with gestational diabetes by changing gut bacteria and reducing inflammation.

## Contribution

The novel contribution is the integrative multi-omics analysis linking probiotic effects to microbiota shifts, metabolomic changes, and gene expression in gestational diabetes.

## Key findings

- Probiotic supplementation increased Lactobacillus and Bifidobacterium while reducing Escherichia/Shigella in GDM patients.
- Short-chain fatty acids like butyrate and acetate increased significantly after probiotic treatment.
- Probiotics improved insulin sensitivity and gut barrier function while reducing inflammation markers like TNF-α and IL-6.

## Abstract

Gestational diabetes mellitus (GDM) is a common pregnancy disorder. It is associated with impaired glucose tolerance and insulin resistance, increasing the potential risks for both maternal and fetal complications. GDM is associated with an increased risk of type 2 diabetes later in life. Management is a big issue in maternal health. New work has underscored the role of the gut microbiota in metabolism and immune function. This indicates that probiotics might exert their mode of action through modulating the microbiota and controlling metabolism.

This study employs a multi-omics strategy to assess the impact of probiotic administration on gut microbiota composition, metabolomic profiles, and host gene expression in GDM women. Women with GDM received probiotics for 8 weeks. Metagenomic sequencing quantified alterations of gut microbiota composition and LC-MS provided untargeted metabolomics in serum and urine. Gene expression was analyzed by qRT-PCR in reference to other physiological factors such as insulin signaling, inflammation, oxidative stress, and gut barrier. Data integration was performed using Principal Component Analysis (PCA), Partial Least Squares Discriminant Analysis (PLS-DA), and network analysis, then pathway enrichment analysis was conducted with KEGG and MetaboAnalyst.

The supplementation of probiotics resulted in a significant change of gut microbiota (Lactobacillus 7.6-fold; Bifidobacterium 6.4-fold). Escherichia/Shigella was reduced. The amounts of short-chain fatty acids (SCFAs), especially butyrate and acetate, were increased 3.1 fold and 2.5 fold, respectively. In a gene expression assessment, the insulin receptor and AKT increased 2.5- and 1.9-fold higher, respectively, indicating greater insulin sensitivity. Levels of TNF-α and IL-6 decreased; however, genes related to gut barrier function (ZO-1, CLDN1) increased.

The administration of probiotic has a great impact on gut microbiome, metabolic activity, and host gene expression in women with GDM. Our data indicate that probiotics may represent a non-invasive and safe treatment for gestational diabetes through enhancing insulin sensitivity, anti-inflammatory environment, and gut health status. Larger confirmatory studies are needed to corroborate these findings and augment future clinical application of probiotics in GDM patients.

## Linked entities

- **Genes:** AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207], TNF (tumor necrosis factor) [NCBI Gene 7124], IL6 (interleukin 6) [NCBI Gene 3569], TJP1 (tight junction protein 1) [NCBI Gene 7082], CLDN1 (claudin 1) [NCBI Gene 9076]
- **Chemicals:** butyrate (PubChem CID 104775), acetate (PubChem CID 175)
- **Diseases:** gestational diabetes mellitus (MONDO:0005406), type 2 diabetes (MONDO:0005148)

## Full-text entities

- **Genes:** TJP1 (tight junction protein 1) [NCBI Gene 7082] {aka ZO-1}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, INSR (insulin receptor) [NCBI Gene 3643] {aka CD220, HHF5}, CLDN1 (claudin 1) [NCBI Gene 9076] {aka CLD1, ILVASC, SEMP1}, INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}
- **Diseases:** impaired glucose tolerance (MESH:D018149), type 2 diabetes (MESH:D003924), insulin resistance (MESH:D007333), pregnancy disorder (MESH:D011254), GDM (MESH:D016640), inflammation (MESH:D007249)
- **Chemicals:** SCFAs (MESH:D005232), butyrate (MESH:D002087), acetate (MESH:D000085)
- **Species:** Shigella (genus) [taxon 620], Homo sapiens (human, species) [taxon 9606], gut metagenome (species) [taxon 749906], Escherichia coli (E. coli, species) [taxon 562], Lactobacillus (genus) [taxon 1578], Bifidobacterium (genus) [taxon 1678]

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13033712/full.md

## References

32 references — full list in the complete paper: https://tomesphere.com/paper/PMC13033712/full.md

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Source: https://tomesphere.com/paper/PMC13033712