# YTH N6-methyladenosine RNA binding protein 2 mediated m6A modification of circHIPK2 promotes cellular senescence and osteoarthritis progression by inhibiting autophagy

**Authors:** Dianbo Long, Zhencan Lin, Zhiwen Li, Ming Li, Xiaoyi Zhao, Zengfa Deng, Zongrui Jiang, Wei Li, Yanlin Zhong, Aishan He, Yiyang Xu, Guping Mao, Yan Kang

PMC · DOI: 10.1186/s43556-026-00441-4 · 2026-03-27

## TL;DR

This study shows that a specific RNA modification promotes cartilage cell aging and osteoarthritis by disrupting a cellular cleanup process called autophagy.

## Contribution

Identifies circHIPK2 as a novel m6A-regulated circRNA that inhibits autophagy and accelerates osteoarthritis through YTHDF2-mediated degradation.

## Key findings

- circHIPK2 levels are reduced in osteoarthritis cartilage and its loss worsens chondrocyte aging and autophagy impairment.
- YTHDF2 binds m6A-modified circHIPK2, promoting its degradation and triggering senescence via the PI3K–AKT–mTOR pathway.
- Delivery of circHIPK2 via lipid nanoparticles reduces chondrocyte senescence and slows osteoarthritis progression in mice.

## Abstract

N6‐methyladenosine (m6A) modification has emerged as a critical post-transcriptional regulatory mechanism in osteoarthritis (OA). However, the contribution of m6A-dependent regulation of circular RNAs (circRNAs) to chondrocyte senescence and OA progression remains poorly understood. We aimed to elucidate whether m6A-mediated control of circRNAs regulates chondrocyte senescence and to define the underlying molecular mechanisms contributing to OA progression. Here, we identified an OA-associated circRNA, circHIPK2, and demonstrated that its abundance and function are regulated by an m6A reader–dependent decay mechanism. circHIPK2 expression was reduced in human OA cartilage, and its depletion exacerbated chondrocyte senescence, increased senescence-associated secretory phenotype (SASP) gene expression, and impaired autophagy both in vitro and in the destabilization of the medial meniscus (DMM) model. Mechanistically, YTH N6-methyladenosine RNA-binding protein 2 (YTHDF2) recognized m6A-modified circHIPK2 and facilitated its degradation, thereby reducing circHIPK2 stability. Functionally, circHIPK2 directly interacted with RAB22A. Loss of circHIPK2 weakened this interaction, enhanced RAB22A–PI3K association, activated the PI3K–AKT–mTOR signaling pathway, disrupted autophagic flux, and accelerated senescence-associated phenotypes. Notably, the protective effects of circHIPK2 were abolished in RAB22A-binding–deficient circHIPK2 mutants, establishing a direct link between molecular interaction and functional outcome. Furthermore, we encapsulated circHIPK2 into lipid nanoparticles (circHIPK2-LNP) for transient intra-articular delivery. Intra-articular administration of circHIPK2-LNP attenuated chondrocyte senescence and alleviated OA progression in DMM mice. Collectively, m6A-dependent YTHDF2-mediated degradation of circHIPK2 promotes chondrocyte senescence and OA progression by disrupting autophagy, identifying circHIPK2 as a potential therapeutic target and prognostic biomarker for cartilage aging in OA.

The online version contains supplementary material available at 10.1186/s43556-026-00441-4.

## Linked entities

- **Genes:** HIPK2 (homeodomain interacting protein kinase 2) [NCBI Gene 28996], RAB22A (RAB22A, member RAS oncogene family) [NCBI Gene 57403], PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) [NCBI Gene 5290], AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207], MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475]
- **Proteins:** YTHDF2 (YTH N6-methyladenosine RNA binding protein F2)
- **Diseases:** osteoarthritis (MONDO:0005178)
- **Species:** Homo sapiens (taxon 9606), Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Hipk2 (homeodomain interacting protein kinase 2) [NCBI Gene 15258] {aka 1110014O20Rik, B230339E18Rik, Stank}, YTHDF2 (YTH N6-methyladenosine RNA binding protein F2) [NCBI Gene 51441] {aka CAHL, DF2, HGRG8, NY-REN-2}, Cdkn1a (cyclin dependent kinase inhibitor 1A) [NCBI Gene 12575] {aka CAP20, CDKI, CIP1, Cdkn1, P21, SDI1}, Ythdf1 (YTH N6-methyladenosine RNA binding protein 1) [NCBI Gene 228994] {aka 2210410K23Rik, 8030473O16}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, Mettl3 (methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit) [NCBI Gene 56335] {aka 2310024F18Rik, M6A, Spo8}, Pik3r1 (phosphoinositide-3-kinase regulatory subunit 1) [NCBI Gene 18708] {aka PI3K, p50alpha, p55alpha, p85alpha}, RAB22A (RAB22A, member RAS oncogene family) [NCBI Gene 57403], Wtap (WT1 associating protein) [NCBI Gene 60532] {aka 2810408K05Rik, 9430038B09Rik}, Rip (regulation of phenobarbitol-inducible P450) [NCBI Gene 110628], Alkbh5 (alkB homolog 5, RNA demethylase) [NCBI Gene 268420] {aka Abh5, E130207K11, Ofoxd}, Rab22a (RAB22A, member RAS oncogene family) [NCBI Gene 19334] {aka 3732413A17Rik, E130120E14Rik, Rab22}, ACAN (aggrecan) [NCBI Gene 176] {aka AGC1, AGCAN, CSPG1, CSPGCP, MSK16, SEDK}, Nup62 (nucleoporin 62) [NCBI Gene 18226] {aka D7Ertd649e, Nupc1, p62}, H2ax (H2A.X variant histone) [NCBI Gene 15270] {aka H2A.X, H2afx, Hist5-2ax, gammaH2ax}, Mtor (mechanistic target of rapamycin kinase) [NCBI Gene 56717] {aka 2610315D21Rik, FRAP, FRAP2, Frap1, RAFT1, RAPT1}, Mettl14 (methyltransferase 14, N6-adenosine-methyltransferase subunit) [NCBI Gene 210529] {aka G430022H21Rik, mKIAA1627}, Ulk1 (unc-51 like kinase 1) [NCBI Gene 22241] {aka Unc51.1, mKIAA0722}, Col2a1 (collagen, type II, alpha 1) [NCBI Gene 12824] {aka Col2, Col2a, Col2a-1, Del1, Dmm, Lpk}, MAP1LC3A (microtubule associated protein 1 light chain 3 alpha) [NCBI Gene 84557] {aka ATG8E, LC3, LC3A, MAP1ALC3, MAP1BLC3}, RUNX2 (RUNX family transcription factor 2) [NCBI Gene 860] {aka AML3, CBF-alpha-1, CBFA1, CCD, CCD1, CLCD}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, Ythdc1 (YTH domain containing 1) [NCBI Gene 231386] {aka A730098D12Rik, mKIAA1966}, Nusap1 (nucleolar and spindle associated protein 1) [NCBI Gene 108907] {aka 2610201A12Rik, ANKT, BM037, LNP, NuSAP, Q0310}, Mmp13 (matrix metallopeptidase 13) [NCBI Gene 17386] {aka Clg, MMP-13, Mmp1}, Bcl2 (B cell leukemia/lymphoma 2) [NCBI Gene 12043] {aka Bcl-2, C430015F12Rik, D630044D05Rik, D830018M01Rik}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, Rida (reactive intermediate imine deaminase A homolog) [NCBI Gene 15473] {aka HR12, HRP12, Hrsp12}, ADAMTS4 (ADAM metallopeptidase with thrombospondin type 1 motif 4) [NCBI Gene 9507] {aka ADAMTS-2, ADAMTS-4, ADMP-1}, Rere (arginine glutamic acid dipeptide (RE) repeats) [NCBI Gene 68703] {aka 1110033A15Rik, ARG, ARP, ATN1L, Atr2, DNB1}, Rpph1 (ribonuclease P RNA component H1) [NCBI Gene 85029] {aka Gm24821, H1RNA, Rmrp5, Rpr}, Glb1 (galactosidase, beta 1) [NCBI Gene 12091] {aka Bge, Bgl, Bgl-e, Bgl-s, Bgl-t, Bgs}, Akt1 (Akt serine/threonine kinase 1) [NCBI Gene 11651] {aka Akt, LTR-akt, PKB, PKB/Akt, PKBalpha, Rac}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, CDKN2A (cyclin dependent kinase inhibitor 2A) [NCBI Gene 1029] {aka ARF, CAI2, CDK4I, CDKN2, CMM2, INK4}, Alb (albumin) [NCBI Gene 11657] {aka Alb-1, Alb1, BCL001, BCL002, BPL001}, NUP62 (nucleoporin 62) [NCBI Gene 23636] {aka IBSN, SNDI, p62}, Ago2 (argonaute RISC catalytic subunit 2) [NCBI Gene 239528] {aka 1110029L17Rik, 2310051F07Rik, Eif2c2, Gerp95, Gm10365, mKIAA4215}, Bax (BCL2-associated X protein) [NCBI Gene 12028], HIPK2 (homeodomain interacting protein kinase 2) [NCBI Gene 28996] {aka PRO0593}, Ctnnb1 (catenin beta 1) [NCBI Gene 12387] {aka Bfc, Catnb, Mesc}, COL2A1 (collagen type II alpha 1 chain) [NCBI Gene 1280] {aka ACG2, ANFH, ANFH1, AOM, COL11A3, EDMMD}, Il1b (interleukin 1 beta) [NCBI Gene 16176] {aka IL-1beta, Il-1b}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, Cdkn2a (cyclin dependent kinase inhibitor 2A) [NCBI Gene 12578] {aka ARF-INK4a, Arf, INK4a-ARF, Ink4a/Arf, MTS1, Pctr1}, Fto (FTO alpha-ketoglutarate dependent dioxygenase) [NCBI Gene 26383] {aka mKIAA1752}, Ythdf3 (YTH N6-methyladenosine RNA binding protein 3) [NCBI Gene 229096] {aka 9130022A11Rik}, H3P16 (H3 histone pseudogene 16) [NCBI Gene 644914] {aka H3.6, H3F3AP6, p21}, SOX9 (SRY-box transcription factor 9) [NCBI Gene 6662] {aka CMD1, CMPD1, ENH13, SRA1, SRXX2, SRXY10}, Abcc1 (ATP-binding cassette, sub-family C member 1) [NCBI Gene 17250] {aka Abcc1a, Abcc1b, MRP, Mdrap, Mrp1}, MMP13 (matrix metallopeptidase 13) [NCBI Gene 4322] {aka CLG3, MANDP1, MDST, MMP-13}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, Elf3 (E74-like factor 3) [NCBI Gene 13710] {aka ESE-1, ESX, jen}, Ythdf2 (YTH N6-methyladenosine RNA binding protein 2) [NCBI Gene 213541] {aka 9430020E02Rik, HGRG8, NY-REN-2}
- **Diseases:** Synovial hyperplasia (MESH:D006965), COVID-19 (MESH:D000086382), meniscal degeneration (MESH:D010007), pulmonary fibrosis (MESH:D011658), chondrocyte degeneration (MESH:D009410), synovial hypertrophy (MESH:D013585), gait defects (MESH:D020234), degenerative joint disorder (MESH:D019636), inflammatory (MESH:D007249), OA (MESH:D010003), Pain hypersensitivity (MESH:D010146), cardiovascular diseases (MESH:D002318), cytotoxicity (MESH:D064420), joint disorder (MESH:D007592), age- (MESH:D019588), cancer (MESH:D009369), obesity (MESH:D009765), bone sclerosis (MESH:D001847), Cartilage Repair (MESH:D002357), joint injury (MESH:D000092464), NA (MESH:C537354), medial meniscus (MESH:D000070600)
- **Chemicals:** EDTA (MESH:D004492), AG (MESH:D012834), osmium tetroxide (MESH:D009993), biotin (MESH:D001710), X-Gal (MESH:C044888), TBHP (MESH:D020122), lipid (MESH:D008055), paraformaldehyde (MESH:C003043), Safranin O (MESH:C009195), eosin (MESH:D004801), DAPI (MESH:C007293), SDS (MESH:D012967), glutaraldehyde (MESH:D005976), Actinomycin D (MESH:D003609), m6A (MESH:C005955), CO2 (MESH:D002245), Tween-20 (MESH:D011136), N6-methyladenosine (MESH:C010223), hematoxylin (MESH:D006416), Etoposide (MESH:D005047), DAB (MESH:C000469), F-12 (MESH:C007782), Triton X-100 (MESH:D017830), SA (MESH:D000077145), H2O2 (MESH:D006861), H&amp;E (MESH:D006371), ALC-0315 (MESH:C000712847), penicillin (MESH:D010406), sodium pentobarbital (MESH:D010424), BafA1 (MESH:C040929), Fast Green (MESH:C035906), streptomycin (MESH:D013307), polyvinylidene difluoride (MESH:C024865), DSPC (MESH:C010942), Cholesterol (MESH:D002784), paraffin (MESH:D010232), DMM (-)
- **Species:** Adeno-associated virus (species) [taxon 272636], Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** DeltaG511, deletion of residues 76-97, R76, P0013E, G511A, deletion of residue 76, GGACU mutated to GGCCU, R76A, G511
- **Cell lines:** C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU), BV2 — Mus musculus (Mouse), Transformed cell line (CVCL_0182)

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13031695/full.md

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Source: https://tomesphere.com/paper/PMC13031695