# Modulation of Cell Signaling Pathways in Silica Nanoparticle-Saturated Macrophages

**Authors:** Sushanto Kumar Saha, Cansu Umran Tunc, Nitish Khurana, Philip J. Moos, Hamidreza Ghandehari

PMC · DOI: 10.3390/pharmaceutics18030344 · Pharmaceutics · 2026-03-11

## TL;DR

This study explores how silica nanoparticles affect macrophage gene expression and immune signaling pathways when taken up by the cells.

## Contribution

The study reveals how specific physicochemical properties of silica nanoparticles modulate macrophage gene expression and immune signaling.

## Key findings

- Porous silica nanoparticles caused more significant changes in gene expression than nonporous ones.
- Immune signaling pathways like TNF-alpha and p53 were modulated depending on nanoparticle properties.
- SNP uptake increased TNF-alpha cytokine levels but not IL-6 or IL-12p70.

## Abstract

Background/Objectives: Upon systemic delivery, macrophages take up a significant portion of nanoparticles and may become saturated. The saturation of macrophages may pose risks to overall immune function and signaling pathways. While some information is available on the survival and functionality of macrophages upon saturation with nanoparticles, there is limited understanding of the molecular-level changes that can occur and their corresponding influences on macrophage phenotypes, gene expression, and immune signaling pathways. Methods: In this study, RAW 264.7 macrophages were saturated with silica nanoparticles (SNPs) of different sizes (50 and 100 nm), porosities (nonporous, mesoporous), densities (solid, mesoporous, and hollow), and surface compositions (hydrophobicity) at their maximum non-toxic concentrations. The saturated macrophages were evaluated for changes in gene expression and immune signaling pathways by RNA sequencing, weighted gene co-expression network analysis (WGCNA), and Hallmark and KEGG pathway analyses. Results: Our results show that in the range studied, the particle size did not have a significant effect on the gene expression profile. Porous SNPs of comparable sizes resulted in increased and unique changes in the gene expression profile compared to nonporous SNPs. Major immune signaling pathways, including TNF-alpha signaling via NF-κB pathways, mTORC1 signaling, and p53 pathways, were modulated in SNP-saturated macrophages. This modulation depended on the physicochemical properties of the particles. The Th1/Th2 multiplex immunoassay revealed that the uptake of SNPs increases the amount of the TNF-alpha cytokine compared to the nontreated controls, whereas no changes in IL-6 and IL-12p70 pro-inflammatory cytokines were observed. Conclusions: Our results demonstrate that physicochemical properties of SNPs, such as porosity, size, surface functionality, and density, influence the modulation of gene expression and macrophage immune signaling pathways. These results, along with others, can provide guidance on the selection of silica nanoparticles for the safe and effective systemic delivery of bioactive agents.

## Linked entities

- **Proteins:** TNF (tumor necrosis factor), NFKB1 (nuclear factor kappa B subunit 1), Crtc (CREB-regulated transcription coactivator), TP53 (tumor protein p53)
- **Chemicals:** TNF-alpha (PubChem CID 44356648), IL-6 (PubChem CID 165368475)

## Full-text entities

- **Genes:** TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}
- **Diseases:** inflammatory (MESH:D007249)
- **Chemicals:** SNP (-), silica (MESH:D012822)

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13030532/full.md

## References

45 references — full list in the complete paper: https://tomesphere.com/paper/PMC13030532/full.md

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Source: https://tomesphere.com/paper/PMC13030532