# African Swine Fever Virus R238L and R298L Disrupt Lung Cell Collagen Formation and Cell Adhesion Pathway by Targeting Transcription Factors Containing zf-C2H2 Domain

**Authors:** Siqi Niu, Fanghong Zhang, Jingchun Wen, Yiyun Wang, Alegria Agostinho Francisco, Beneque Alberto Anzol, Min Yao, Guoping Liu, Jianwu Wang, Tinghua Huang

PMC · DOI: 10.3390/vetsci13030236 · Veterinary Sciences · 2026-02-28

## TL;DR

This study shows how two proteins from the African Swine Fever Virus disrupt lung cell structure by targeting specific host transcription factors.

## Contribution

The novel contribution is identifying how ASFV proteins R238L and R298L bind to SP2 and KLF6 to disrupt collagen and cell adhesion pathways.

## Key findings

- ASFV proteins R238L and R298L bind to SP2 and KLF6 transcription factors.
- Binding reduces transcription of genes involved in collagen formation and cell adhesion.
- This disruption may aid viral pathogenesis by weakening lung cell structure.

## Abstract

Collagen formation (CF) and cell adhesion (CH) are essential biological processes that maintain cellular structure and communication. This study aimed to investigate whether and how the African Swine Fever Virus (ASFV) affects these host pathways. We identified two host transcription factors, SP2 and KLF6, which regulate the transcription of CF and CH genes. Furthermore, we found that two viral proteins, R238L and R298L, can bind directly to SP2 and KLF6 and reduce the transcription of their target genes.

The regulatory mechanisms of collagen formation and cell adhesion pathways during African Swine Fever Virus (ASFV) infection remain poorly understood. This study aims to investigate whether ASFV manipulates these pathways by targeting host transcriptional regulators. Through weighted Kendall correlation analysis of transcription factor binding sites (TFBSs) in differentially expressed genes (DEGs) from the lung tissue of ASFV-recovered pigs, we identified SP2 and KLF6 as key transcription factors (TFs) associated with collagen synthesis and cell adhesion, respectively. Domain–domain interaction prediction, followed by Förster resonance energy transfer (FRET) assays, confirmed that the ASFV proteins R238L and R298L directly bind to the zf-C2H2 domains of SP2 and KLF6. Furthermore, overexpression of R238L and R298L in HeLa and 3D4/21 cells significantly downregulated SP2 and KLF6 target genes involved in these pathways. Our findings reveal a novel mechanism by which ASFV proteins R238L and R298L interfere with host transcription factors SP2 and KLF6, potentially disrupting collagen matrix integrity and cell adhesion to facilitate viral pathogenesis.

## Linked entities

- **Genes:** SP2 (Sp2 transcription factor) [NCBI Gene 6668], KLF6 (KLF transcription factor 6) [NCBI Gene 1316]
- **Proteins:** R298L (serine protein kinase), SP2 (Sp2 transcription factor), KLF6 (KLF transcription factor 6)
- **Diseases:** African Swine Fever (MONDO:0025377)
- **Species:** Sus scrofa (taxon 9823)

## Full-text entities

- **Genes:** TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, ITGA3 (integrin subunit alpha 3) [NCBI Gene 3675] {aka CD49C, FRP-2, GAP-B3, GAPB3, ILNEB, JEB7}, COL1A1 [NCBI Gene 397571], Klf6 (Kruppel-like transcription factor 6) [NCBI Gene 23849] {aka BCD1, CPBP, Copeb, FM2, FM6, Ierepo1}, COL5A1 (collagen type V alpha 1 chain) [NCBI Gene 397533], ITGB1 (integrin subunit beta 1) [NCBI Gene 3688] {aka CD29, FNRB, GPIIA, MDF2, MSK12, VLA-BETA}, LAMC2 (laminin subunit gamma 2) [NCBI Gene 3918] {aka B2T, BM600, CSF, EBR2, EBR2A, JEB3A}, ITGB4 (integrin subunit beta 4) [NCBI Gene 3691] {aka CD104, GP150, JEB5A, JEB5B}, LAMB3 (laminin subunit beta 3) [NCBI Gene 3914] {aka AI1A, BM600-125KDA, JEB1A, JEB1B, LAM5, LAMNB1}, COL4A2 (collagen type IV alpha 2 chain) [NCBI Gene 1284] {aka BSVD2, BSVD2A, BSVD2B, ICH, POREN2}, Ank2 (ankyrin 2, brain) [NCBI Gene 109676] {aka 100043364, Ank-2, Gm4392}, CCN2 (cellular communication network factor 2) [NCBI Gene 1490] {aka CTGF, HCS24, IBP-8, IGFBP8, KMD, NOV2}, SP2 (Sp2 transcription factor) [NCBI Gene 6668], SQSTM1 (sequestosome 1) [NCBI Gene 8878] {aka A170, DMRV, EBIAP, FTDALS3, NADGP, OSIL}, COL18A1 (collagen type XVIII alpha 1 chain) [NCBI Gene 80781] {aka GLCC, KNO, KNO1, KS}, ITGB4 (integrin subunit beta 4) [NCBI Gene 100521988], HSPG2 (heparan sulfate proteoglycan 2) [NCBI Gene 3339] {aka HSPG, PLC, PRCAN, SJA, SJS, SJS1}, HSPD1 (heat shock protein family D (Hsp60) member 1) [NCBI Gene 3329] {aka CPN60, GROEL, HLD4, HSP-60, HSP60, HSP65}, COL6A2 (collagen type VI alpha 2 chain) [NCBI Gene 100101552], IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, RAC1 (Rac family small GTPase 1) [NCBI Gene 5879] {aka MIG5, MRD48, Rac-1, TC-25, p21-Rac1}, LAMC3 (laminin subunit gamma 3) [NCBI Gene 10319] {aka OCCM}, CIITA (class II major histocompatibility complex transactivator) [NCBI Gene 4261] {aka C2TA, CIITAIV, MHC2D1, MHC2TA, NLRA}, STING1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 340061] {aka ERIS, MITA, MPYS, NET23, SAVI, STING}, ITGA3 (integrin subunit alpha 3) [NCBI Gene 100517053], KLF6 (KLF transcription factor 6) [NCBI Gene 1316] {aka BCD1, CBA1, COPEB, CPBP, GBF, PAC1}, FAIM (Fas apoptotic inhibitory molecule) [NCBI Gene 55179] {aka FAIM1}, ARSF (arylsulfatase F) [NCBI Gene 416] {aka ASF}, FN1 (fibronectin 1) [NCBI Gene 2335] {aka CIG, ED-B, FINC, FN, FNZ, GFND}, ITGB5 (integrin subunit beta 5) [NCBI Gene 3693], DDX17 (DEAD-box helicase 17) [NCBI Gene 10521] {aka P72, RH70}, CDH23 (cadherin related 23) [NCBI Gene 64072] {aka CDHR23, PITA5, USH1D}, ITGAV (integrin subunit alpha V) [NCBI Gene 3685] {aka CD51, IDNDC, MSK8, VNRA, VTNR}, RHOA (ras homolog family member A) [NCBI Gene 387] {aka ARH12, ARHA, EDFAOB, RHO12, RHOH12}, ANK2 (ankyrin 2) [NCBI Gene 287] {aka ANK-2, CFAP87, FAP87, LQT4, brank-2}, EIF4G1 (eukaryotic translation initiation factor 4 gamma 1) [NCBI Gene 1981] {aka EIF-4G1, EIF4F, EIF4G, EIF4GI, P220, PARK18}, ANK2 (ankyrin 2) [NCBI Gene 100512728], Sp2 (Sp2 transcription factor) [NCBI Gene 78912] {aka 4930480I16Rik, mKIAA0048}, SP2 (Sp2 transcription factor) [NCBI Gene 100626417], HSPH1 (heat shock protein family H (Hsp110) member 1) [NCBI Gene 10808] {aka HSP105, HSP105A, HSP105B, NY-CO-25}, NLRC5 (NLR family CARD domain containing 5) [NCBI Gene 84166] {aka CLR16.1, NOD27, NOD4}, COL6A2 (collagen type VI alpha 2 chain) [NCBI Gene 1292] {aka BTHLM1, BTHLM1B, PP3610, UCMD1, UCMD1B}, COL18A1 [NCBI Gene 100579175], KLF6 (KLF transcription factor 6) [NCBI Gene 100174961], COL5A1 (collagen type V alpha 1 chain) [NCBI Gene 1289] {aka EDSC, EDSCL1, FMDMF}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, COL4A2 (collagen type IV alpha 2 chain) [NCBI Gene 100153454], CGAS (cyclic GMP-AMP synthase) [NCBI Gene 115004] {aka C6orf150, D4, MB21D1, h-cGAS}, PTK2 (protein tyrosine kinase 2) [NCBI Gene 5747] {aka FADK, FADK 1, FAK, FAK1, FRNK, PPP1R71}, DDX3X (DEAD-box helicase 3 X-linked) [NCBI Gene 1654] {aka CAP-Rf, DBX, DDX14, DDX3, HLP2, MRX102}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, COL3A1 (collagen type III alpha 1 chain) [NCBI Gene 1281] {aka EDS4A, EDSVASC, PMGEDSV}, ITGB5 (integrin subunit beta 5) [NCBI Gene 100134977], ABL1 (ABL proto-oncogene 1, non-receptor tyrosine kinase) [NCBI Gene 25] {aka ABL, BCR-ABL, CHDSKM, JTK7, bcr/abl, c-ABL}, NUP62 (nucleoporin 62) [NCBI Gene 23636] {aka IBSN, SNDI, p62}, LAMB3 [NCBI Gene 100513489], CD2 (CD2 molecule) [NCBI Gene 914] {aka LFA-2, SRBC, T11}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, F3 (coagulation factor III, tissue factor) [NCBI Gene 2152] {aka CD142, TF, TFA}
- **Diseases:** unconsciousness (MESH:D014474), viremia (MESH:D014766), death (MESH:D003643), injury to (MESH:D014947), Infection (MESH:D007239), hemorrhage (MESH:D006470), inflammation (MESH:D007249), COVID-19 (MESH:D000086382), Influenza (MESH:D007251), fever (MESH:D005334), fibrosis (MESH:D005355), ASFV infection (MESH:D000357), tumor (MESH:D009369), overdose (MESH:D062787), viral (MESH:D014777)
- **Chemicals:** zolazepam (MESH:D015041), sodium pentobarbital (MESH:D010424), CLIP-Cell  505 (-), nitrogen (MESH:D009584), CO2 (MESH:D002245), PBS (MESH:D007854), TB (MESH:D013725), tiletamine (MESH:D013992), xylazine (MESH:D014991)
- **Species:** Homo sapiens (human, species) [taxon 9606], African swine fever virus (no rank) [taxon 10497], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049], Human papillomavirus (species) [taxon 10566], human gammaherpesvirus 4 (Epstein Barr virus, no rank) [taxon 10376], Enterovirus A71 (no rank) [taxon 39054], Human betaherpesvirus 5 (no rank) [taxon 10359], Viruses (acellular root) [taxon 10239], Hepatitis C virus [taxon 11103], Sus scrofa (pig, species) [taxon 9823], Adenoviridae (family) [taxon 10508]
- **Mutations:** R298L, R238L, R238L, R298L
- **Cell lines:** HeLa — Homo sapiens (Human), Human papillomavirus-related endocervical adenocarcinoma, Cancer cell line (CVCL_0030), 3D4/21 — Sus scrofa (Pig), Transformed cell line (CVCL_0F14), Cell — Muntiacus muntjak (Barking deer), Spontaneously immortalized cell line (CVCL_9126), CC505 — Homo sapiens (Human), Transformed cell line (CVCL_JE09), SC430 — Homo sapiens (Human), Chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_TP77), 3D/421 — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_7054)

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13030306/full.md

## References

43 references — full list in the complete paper: https://tomesphere.com/paper/PMC13030306/full.md

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Source: https://tomesphere.com/paper/PMC13030306