# Long Non-Coding RNA Encoded by Infectious Bronchitis Virus Facilitates Viral Replication via Direct Interaction with G3BP2 and Expression Regulation of a Novel Host MicroRNA

**Authors:** Mingjing Zhang, Zhichao Cai, Hongliu An, Rong He, Songbai Zhang, Shouguo Fang

PMC · DOI: 10.3390/vetsci13030215 · Veterinary Sciences · 2026-02-25

## TL;DR

This study shows how a virus uses a long non-coding RNA to interact with a host protein and regulate a microRNA, helping the virus replicate more effectively.

## Contribution

The study identifies a novel host miRNA and demonstrates how IBV-lncRNA interacts with G3BP2 to facilitate viral replication.

## Key findings

- IBV-lncRNA interacts with the host protein G3BP2 to support viral replication.
- A novel host miRNA, novel-340, targets G3BP2's 3′-UTR and downregulates its expression.
- The IBV-lncRNA/novel-340/G3BP2 network plays a role in regulating IBV replication.

## Abstract

Virus-encoded long non-coding RNA and virus-induced host microRNA (miRNA) play significant roles in the viral life cycle. In this study, we identified a host protein, G3BP2, that specifically interacts with the long non-coding RNA encoded by the infectious bronchitis virus (IBV) (IBV-lncRNA) and a novel host miRNA (novel-340) that targets the 3′-untranslated region of G3BP2 in IBV-infected H1299 cells. We discovered that IBV-lncRNA can facilitate IBV replication through direct interaction with G3BP2 and regulation of the expression of novel-340. Our findings offer valuable insights into the biological functions of IBV-lncRNA.

Long non-coding RNAs (lncRNAs) encoded by viruses play crucial roles in viral infection, pathogenesis processes, the interaction between viruses and hosts, and immune escape. Herein, by employing RNA pull-down, mass spectrometry technology, and RNA immunoprecipitation, we identified a host protein (G3BP2) that specifically interacts with the lncRNA encoded by the infectious bronchitis virus (IBV). Additionally, we identified a novel host miRNA (novel-340) in IBV-infected H1299 cells and further verified that novel-340 can target the 3′-UTR (untranslated region) of G3BP2 and downregulate its expression in a dose-dependent manner. We discovered that IBV-lncRNA may facilitate IBV replication in H1299 cells through direct interaction with G3BP2 and/or the regulation of the IBV-lncRNA/novel-340/G3BP2 interactive regulatory network. This work deepens the understanding of the biological function of IBV-lncRNA.

## Linked entities

- **Genes:** G3BP2 (G3BP stress granule assembly factor 2) [NCBI Gene 9908]
- **Proteins:** G3BP2 (G3BP stress granule assembly factor 2)
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** FUBP3 (far upstream element binding protein 3) [NCBI Gene 8939] {aka FBP3}, NUTF2 (nuclear transport factor 2) [NCBI Gene 10204] {aka NTF-2, NTF2, PP15}, XRN1 (5'-3' exoribonuclease 1) [NCBI Gene 54464] {aka SEP1}, EIF2AK2 (eukaryotic translation initiation factor 2 alpha kinase 2) [NCBI Gene 5610] {aka PKR, PPP1R83, PRKR}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, MRAP (melanocortin 2 receptor accessory protein) [NCBI Gene 56246] {aka B27, C21orf61, FALP, GCCD2, MRAP1}, PIK3C2A (phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha) [NCBI Gene 5286] {aka CPK, OCSKD, PI3-K-C2(ALPHA), PI3-K-C2A, PI3K-C2-alpha, PI3K-C2alpha}, KHSRP (KH-type splicing regulatory protein) [NCBI Gene 8570] {aka FBP2, FUBP2, KSRP, p75}, G3BP2 (G3BP stress granule assembly factor 2) [NCBI Gene 9908], TLR3 (toll like receptor 3) [NCBI Gene 7098] {aka CD283, IIAE2, IMD83}, ELAVL1 (ELAV like RNA binding protein 1) [NCBI Gene 1994] {aka ELAV1, HUR, Hua, MelG}, YWHAQ (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta) [NCBI Gene 10971] {aka 14-3-3, 1C5, HS1}, IFIH1 (interferon induced with helicase C domain 1) [NCBI Gene 64135] {aka AGS7, Hlcd, IDDM19, IMD95, MDA-5, MDA5}, EIF2A (eukaryotic translation initiation factor 2A) [NCBI Gene 83939] {aka CDA02, EIF-2A, MST089, MSTP004, MSTP089}, MAVS (mitochondrial antiviral signaling protein) [NCBI Gene 57506] {aka CARDIF, IPS-1, IPS1, VISA}, G3BP1 (G3BP stress granule assembly factor 1) [NCBI Gene 10146] {aka G3BP, HDH-VIII}, MIR122 (microRNA 122) [NCBI Gene 406906] {aka MIR122A, MIRN122, MIRN122A, hsa-mir-122, miRNA122, miRNA122A}, DHX9 (DExH-box helicase 9) [NCBI Gene 1660] {aka DDX9, LKP, MRD75, NDH2, NDHII, RHA}, ADAR (adenosine deaminase RNA specific) [NCBI Gene 103] {aka ADAR1, AGS6, DRADA, DSH, DSRAD, G1P1}, MMUT (methylmalonyl-CoA mutase) [NCBI Gene 4594] {aka MCM, MUT}, PRMT1 (protein arginine methyltransferase 1) [NCBI Gene 3276] {aka ANM1, HCP1, HRMT1L2, IR1B4}
- **Diseases:** Viral Infection (MESH:D014777), COVID-19 (MESH:D000086382), injury to (MESH:D014947), infection (MESH:D007239), non-small cell lung carcinoma (MESH:D002289), IBV infection (MESH:D001991)
- **Chemicals:** formaldehyde (MESH:D005557), ATP (MESH:D000255), CO2 (MESH:D002245), oligonucleotides (MESH:D009841), agarose (MESH:D012685), PBS (-), PVDF (MESH:C024865), crystal violet (MESH:D005840), SDS (MESH:D012967), Biotin (MESH:D001710), TRIzol (MESH:C411644)
- **Species:** Gammacoronavirus (genus) [taxon 694013], Yellow fever virus (no rank) [taxon 11089], Infectious bronchitis virus (no rank) [taxon 11120], Zika virus (no rank) [taxon 64320], Human betaherpesvirus 5 (no rank) [taxon 10359], hepatitis C virus [taxon 11103], Transmissible gastroenteritis virus (no rank) [taxon 11149], West Nile virus (no rank) [taxon 11082], Simian hemorrhagic fever virus (no rank) [taxon 38143], Japanese encephalitis virus (no rank) [taxon 11072], Human gammaherpesvirus 8 (no rank) [taxon 37296], Dengue virus (no rank) [taxon 12637], Coronaviridae (family) [taxon 11118], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049], Cercopithecidae (monkey, family) [taxon 9527], Porcine epidemic diarrhea virus (no rank) [taxon 28295], Homo sapiens (human, species) [taxon 9606], Gallus gallus (bantam, species) [taxon 9031], Severe acute respiratory syndrome-related coronavirus (no rank) [taxon 694009]
- **Mutations:** C27107G
- **Cell lines:** DF-1 — Gallus gallus (Chicken), Spontaneously immortalized cell line (CVCL_XF08), H1299 — Homo sapiens (Human), Lung large cell carcinoma, Cancer cell line (CVCL_0060), Vero — Chlorocebus sabaeus (Green monkey), Spontaneously immortalized cell line (CVCL_0059), 012297.5 — Mus musculus (Mouse), Transformed cell line (CVCL_5U93), CCL-81 — Homo sapiens (Human), Neoplasm, Cancer cell line (CVCL_M024)

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC13030203/full.md

## Figures

11 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13030203/full.md

## References

27 references — full list in the complete paper: https://tomesphere.com/paper/PMC13030203/full.md

---
Source: https://tomesphere.com/paper/PMC13030203