# Identification of Secondary Metabolites from the Lichen Hypotrachyna enderythraea (Zahlbr.) Hale by HPLC-ESI-MS/MS

**Authors:** Fernando Carrasco, Wilfredo Hernández, Nino Castro, Nelly Sivipaucar, Bruno Bongiorno, Oscar Chupayo, Cesar Raposo, Lúcia A. Silva, Jesus M. Rodilla, Eduardo Carrasco, Juan Z. Dávalos

PMC · DOI: 10.3390/molecules31060954 · Molecules · 2026-03-12

## TL;DR

This study identifies sixteen secondary metabolites in a lichen species using advanced mass spectrometry techniques.

## Contribution

The study reports the identification of new bioactive compounds in Hypotrachyna enderythraea using HPLC-Orbitrap ESI tandem MS/MS and DFT calculations.

## Key findings

- Sixteen secondary metabolites were detected in the lichen Hypotrachyna enderythraea extract.
- Exact molecular masses and fragmentation patterns confirmed the presence of bioactive compounds.
- DFT calculations were used to analyze deprotonation sites in polyprotic metabolites.

## Abstract

In this study, sixteen secondary metabolites, including two chromones, four dibenzofurans, three lipids, three depsides, two aromatic compounds, a quinone, and a terpene, were detected in the methanol:acetone (1:1 v/v) extract of the lichen Hypotrachyna enderythraea (Zahlbr.) Hale, using High-Performance Liquid Chromatography coupled to Orbitrap Electrospray Ionization tandem Mass Spectrometry (HPLC-Orbitrap ESI tandem MS/MS). These metabolites were characterized by analysis of their exact molecular masses and corresponding fragmentation patterns. The retention times of the identified metabolites were compared with those of standard compounds, confirming the presence of naturally occurring bioactive compounds. Density Functional Theory (DFT) calculations were employed to investigate preferential deprotonation sites in representative polyprotic metabolites. All these findings may contribute to expanding the spectrum of compounds identified within the genus Hypotrachyna and to evaluating their potential biological activities.

## Linked entities

- **Chemicals:** methanol (PubChem CID 887), acetone (PubChem CID 180)

## Full-text entities

- **Chemicals:** quinone (MESH:C004532), Hale (-), terpene (MESH:D013729), methanol (MESH:D000432), acetone (MESH:D000096), depsides (MESH:D053630), chromones (MESH:D002867), dibenzofurans (MESH:D000072318), lipids (MESH:D008055)
- **Species:** Hypotrachyna enderythraea (species) [taxon 1356498]

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13029706/full.md

## References

69 references — full list in the complete paper: https://tomesphere.com/paper/PMC13029706/full.md

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Source: https://tomesphere.com/paper/PMC13029706