# Pharmacometabolomics Detects Unreported Clopidogrel Metabolites in the Urine of Kidney and Liver Transplant Recipients

**Authors:** Cassandra Piccolotto, Stephan J. L. Bakker, Vincent E. de Meijer, Gérard Hopfgartner, Peter Fodran, Frank Klont

PMC · DOI: 10.3390/metabo16030210 · Metabolites · 2026-03-21

## TL;DR

This study finds new clopidogrel metabolites in transplant patients' urine, suggesting pharmacometabolomics can improve understanding of drug metabolism beyond genetic factors.

## Contribution

The study identifies previously unreported clopidogrel metabolites in transplant recipients using pharmacometabolomics, expanding drug metabolism knowledge.

## Key findings

- 26 clopidogrel-associated metabolites were detected, including some not previously reported.
- Unmetabolized clopidogrel was consistently found in all patients.
- A thiol desulfurization pathway was supported, linking clopidogrel to hydrogen sulfide release.

## Abstract

Background/Objectives: Clopidogrel is a widely prescribed antiplatelet prodrug that requires bioactivation, primarily by the polymorphic CYP2C19 enzyme. Genetic variation in this enzyme leads to differences in active metabolite formation and has prompted the development of pharmacogenetics-guided prescribing. However, current pharmacogenetic strategies are grounded in drug metabolism knowledge derived from mass balance studies conducted in small groups of healthy volunteers. This narrow evidence base may limit the data’s applicability to real-world settings, where factors like polypharmacy or altered organ function may influence drug response. Methods: Pharmacogenetics could benefit from real-world drug metabolism and excretion studies, which we conducted for clopidogrel in 38 kidney and 16 liver transplant recipients from the TransplantLines Biobank and Cohort Study (NCT03272841), utilizing existing LC-SWATH/MS pharmacometabolomic data. Clopidogrel-associated metabolic signals were identified using xenobiotic metabolism knowledge and literature-reported pathways. Results: Across both transplant groups, 26 clopidogrel-associated features were prioritized, of which some matched previously reported urinary metabolites, had previously been observed in plasma, or represented previously unreported metabolites. Clopidogrel carboxylic acid predominated in kidney transplant recipients, whereas its glucuronide form was most abundant in liver transplant recipients. Notably, unmetabolized clopidogrel was consistently detected across all patients. Moreover, our data support a thiol desulfurization route, aligning with emerging evidence of clopidogrel’s role as a hydrogen sulfide-releasing drug. Conclusions: More (putative) clopidogrel metabolites were detected than previously reported, demonstrating the value of pharmacometabolomics in expanding our understanding of drug metabolism. This approach provides novel data that may complement pharmacogenetics research to understand clopidogrel response variability among treated patients.

## Linked entities

- **Genes:** CYP2C19 (cytochrome P450 family 2 subfamily C member 19) [NCBI Gene 1557]
- **Chemicals:** clopidogrel (PubChem CID 2806), clopidogrel carboxylic acid (PubChem CID 9861403), hydrogen sulfide (PubChem CID 402)

## Full-text entities

- **Genes:** CYP4F3 (cytochrome P450 family 4 subfamily F member 3) [NCBI Gene 4051] {aka CPF3, CYP4F, CYPIVF3, LTB4H}, CES1 (carboxylesterase 1) [NCBI Gene 1066] {aka ACAT, CE-1, CEH, CES2, HMSE, HMSE1}, CYP2B6 (cytochrome P450 family 2 subfamily B member 6) [NCBI Gene 1555] {aka CPB6, CYP2B, CYP2B7, CYPIIB6, EFVM, IIB1}, GPT (glutamic--pyruvic transaminase) [NCBI Gene 2875] {aka AAT1, ALT, ALT1, GPT1, SGPT}, PCSK1 (proprotein convertase subtilisin/kexin type 1) [NCBI Gene 5122] {aka BMIQ12, NEC1, PC1, PC1/3, PC3, SPC3}, CYP1A2 (cytochrome P450 family 1 subfamily A member 2) [NCBI Gene 1544] {aka CP12, CYPIA2, P3-450, P450(PA)}, FBN2 (fibrillin 2) [NCBI Gene 2201] {aka CCA, DA9, EOMD}, P2RY12 (purinergic receptor P2Y12) [NCBI Gene 64805] {aka ADPG-R, BDPLT8, HORK3, P2T(AC), P2Y(12)R, P2Y(AC)}, PON1 (paraoxonase 1) [NCBI Gene 5444] {aka ESA, MVCD5, PON}, ALB (albumin) [NCBI Gene 213] {aka FDAHT, HSA, PRO0883, PRO0903, PRO1341}, PPIG (peptidylprolyl isomerase G) [NCBI Gene 9360] {aka CARS-Cyp, CYP, SCAF10, SRCyp}, ACE (angiotensin I converting enzyme) [NCBI Gene 1636] {aka ACE1, CD143, DCP, DCP1}, CYP3A4 (cytochrome P450 family 3 subfamily A member 4) [NCBI Gene 1576] {aka CP33, CP34, CYP3A, CYP3A3, CYPIIIA3, CYPIIIA4}, AP2B1 (adaptor related protein complex 2 subunit beta 1) [NCBI Gene 163] {aka ADTB2, AP105B, AP2-BETA, CLAPB1}, CYP2C19 (cytochrome P450 family 2 subfamily C member 19) [NCBI Gene 1557] {aka CPCJ, CYP2C, CYPIIC17, CYPIIC19, P450C2C, P450IIC19}
- **Diseases:** chronic kidney disease (MESH:D051436), CAG (MESH:D030342), injury to (MESH:D014947), bleeding (MESH:D006470), platelet aggregation (MESH:D001791)
- **Chemicals:** prasugrel (MESH:D000068799), water (MESH:D014867), CsA (MESH:D016572), Clopidogrel carboxylic acid (MESH:C528640), sulfenic acid (MESH:D013434), ammonium formate (MESH:C030544), Clopidogrel (MESH:D000077144), mycophenolate mofetil (MESH:D009173), H3 (MESH:C012616), sodium (MESH:D012964), thione (MESH:D013871), piperidine (MESH:C032727), thiophene (MESH:D013876), glucuronide (MESH:D020719), creatinine (MESH:D003404), methanol (MESH:D000432), cysteine (MESH:D003545), glutathione (MESH:D005978), alcohol (MESH:D000438), PGx (MESH:D011464), chlorine (MESH:D002713), ADP (MESH:D000244), ketone (MESH:D007659), cocaine (MESH:D003042), potassium (MESH:D011188), 2-oxo-clopidogrel (MESH:C540904), H2S (MESH:D006862), carboxylic acid (MESH:D002264), H1-H4 (-), cocaethylene (MESH:C066444), ethanol (MESH:D000431), disulfide (MESH:D004220), thiol (MESH:D013438)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** M18H, rs71647871, C3435T, M18
- **Cell lines:** PC3 — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_0035), PC4 — Rattus norvegicus (Rat), Rat adrenal gland pheochromocytoma, Cancer cell line (CVCL_7090), PC2 — Homo sapiens (Human), Pancreatic carcinoma, Cancer cell line (CVCL_C1YF)

## Full text

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## Figures

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## References

73 references — full list in the complete paper: https://tomesphere.com/paper/PMC13028800/full.md

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Source: https://tomesphere.com/paper/PMC13028800