# Four New Menadione Thioderivatives, Potential Antineoplastic Candidates: In Silico and PARP-1 Inhibition Studies

**Authors:** Francisco Javier Pérez Flores, Luis Jaime Vázquez-López, Adriana Lizbeth Rivera Espejel, María Inés Nicolás-Vázquez, María Z. Saavedra-Leos, Alberto A. Fajardo de la Rosa, Samuel Álvarez-Almazán, Joel Martínez, René Miranda Ruvalcaba

PMC · DOI: 10.3390/molecules31060958 · Molecules · 2026-03-12

## TL;DR

This paper introduces four new menadione-based compounds that show potential as PARP-1 inhibitors, which could be used in cancer treatment.

## Contribution

The study presents four novel menadione thioderivatives with promising PARP-1 inhibition properties.

## Key findings

- Molecules 2 and 3 showed strong binding energy and competitive IC50 values against PARP-1.
- Compound 3 had the lowest free binding energy of −9.35 kcal/mol.
- Compound 2 exhibited the best IC50 value of 13.76 µM.

## Abstract

The design, production, and study of new poly[ADP-ribose] polymerase 1 (PARP-1) inhibitors have emerged as an interesting exploration area, since PARP-1 is an overexpressed enzyme in several carcinomas. In this sense, menadione, or vitamin K3, is well known for its use in correct blood clotting, and for the generation of reactive oxygen species, but it is important to mention that it has been used as an antineoplastic agent against several cell lines. Related to the last commentary, in this work, four novel molecules (2–5) were produced from menadione through a Michael addition protocol, using 1,2-ethanedithiol, cysteamine, benzene-1,4-dithiol, and 4-aminobenzenethiol as nucleophiles, and menadione (1) as substrate, to evaluate them as plausible candidates to inhibit PARP-1. It is convenient to note that after their production and spectroscopic characterization, both docking and theoretical studies for each compound were conducted, using density functional theory (DFT) with the hybrid method B3LYP with the 6-311G(d,p) basis set. As a complement, the reactivity properties determined by DFT calculations were obtained for all compounds; the results revealed that 2 has the best properties to bind with PARP-1, and 3 offered good results. Hence, the target compounds were evaluated in vitro, determining their activity against PARP-1, using olaparib as a reference. Molecules 2 and 3 displayed the free binding energy values −7.97 and −9.35 kcal/mol, respectively, but 2 has the best IC50 value, 13.76 µM. It is important to highlight that 2 and 3 must be considered as potential new inhibitor agents against PARP-1, exhibiting competitive IC50 values with olaparib.

## Linked entities

- **Proteins:** PARP1 (poly(ADP-ribose) polymerase 1)
- **Chemicals:** menadione (PubChem CID 4055), 1,2-ethanedithiol (PubChem CID 10902), cysteamine (PubChem CID 6058), benzene-1,4-dithiol (PubChem CID 4691729), 4-aminobenzenethiol (PubChem CID 14510), olaparib (PubChem CID 23725625)

## Full-text entities

- **Genes:** PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142] {aka ADPRT, ADPRT 1, ADPRT1, ARTD1, PARP, PARP-1}
- **Diseases:** carcinomas (MESH:D009369)
- **Chemicals:** reactive oxygen species (MESH:D017382), Menadione Thioderivatives (-), cysteamine (MESH:D003543), 1,2-ethanedithiol (MESH:C031854), 4-aminobenzenethiol (MESH:C100016), olaparib (MESH:C531550), menadione (MESH:D024483)

## Full text

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## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13028785/full.md

## References

64 references — full list in the complete paper: https://tomesphere.com/paper/PMC13028785/full.md

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Source: https://tomesphere.com/paper/PMC13028785