# Tetrahydrocarbazole as a Versatile Scaffold in Drug Discovery: A Cross-Target SAR Analysis and Design Paradigms

**Authors:** Meiling Ma, Shihao Luo, Shaonan An, Zhuang Nie, Zhao Wei, Jiaxuan Zong, Xuanying Li, Chuan Wang, Yuping Tang, Lin Yao

PMC · DOI: 10.3390/molecules31060977 · Molecules · 2026-03-14

## TL;DR

This paper reviews how tetrahydrocarbazole derivatives can be designed to target multiple diseases by analyzing their structure-activity relationships and proposing new design strategies.

## Contribution

The paper introduces a systematic cross-target SAR analysis and four new design paradigms for tetrahydrocarbazole-based drug development.

## Key findings

- Modifications at positions N-9, C-1, and C-6 of tetrahydrocarbazole influence drug potency and selectivity across multiple targets.
- Four design paradigms—pharmacophore hybridization, conformational constraint, cross-target SAR decoding, and precision intervention—are proposed for drug design.
- A cross-target SAR matrix is presented to guide the rational development of next-generation THCz-based therapeutics.

## Abstract

Tetrahydrocarbazole (THCz) is a privileged scaffold validated by clinically approved drugs such as ondansetron, frovatriptan, and ramatroban and exhibits diverse bioactivities including antimicrobial, antitumor, antidiabetic, and neuroprotective effects. Despite extensive structure–activity relationship (SAR) studies, a systematic integration of findings across different therapeutic targets has been lacking. This review provides a comprehensive SAR dissection of THCz derivatives across key targets (bacterial sliding clamp, BTK, HDAC, AMPK, etc.), analyzing how modifications at key positions of the core scaffold (N-9, C-1, and C-6) influence potency and selectivity. Notably, we highlight four emerging design paradigms: pharmacophore hybridization, conformational constraint, cross-target SAR decoding, and precision intervention. By consolidating fragmented knowledge into a practical cross-target SAR matrix, this review offers a strategic framework for the rational design of next-generation THCz-based therapeutics.

## Linked entities

- **Proteins:** BTK (Bruton tyrosine kinase), HDAC9 (histone deacetylase 9), PRKAA1 (protein kinase AMP-activated catalytic subunit alpha 1)
- **Chemicals:** Tetrahydrocarbazole (PubChem CID 13664), ondansetron (PubChem CID 4595), frovatriptan (PubChem CID 77992), ramatroban (PubChem CID 123879)

## Full-text entities

- **Genes:** BTK (Bruton tyrosine kinase) [NCBI Gene 695] {aka AGMX1, AT, ATK, BPK, IGHD3, IMD1}, PRKAA2 (protein kinase AMP-activated catalytic subunit alpha 2) [NCBI Gene 5563] {aka AMPK, AMPK2, AMPKa2, PRKAA}, HDAC9 (histone deacetylase 9) [NCBI Gene 9734] {aka HD7, HD7b, HD9, HDAC, HDAC7B, HDAC9B}
- **Chemicals:** THCz (-), frovatriptan (MESH:C108128), ramatroban (MESH:C063119), ondansetron (MESH:D017294)

## Full text

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## Figures

46 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13028682/full.md

## References

97 references — full list in the complete paper: https://tomesphere.com/paper/PMC13028682/full.md

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Source: https://tomesphere.com/paper/PMC13028682