# Evaluation of the Cytotoxicity of Biochar Aqueous Extract in Caco-2 Cells: Time-Dependent Regulation of Apoptosis, Associated with miRNA Modulation

**Authors:** Sidra Amin, Klaudia Marcinkowska, Magdalena Wołoszyńska, Sebastian Opaliński, Dawid Skrzypczak, Paweł Wiercik, Łukasz Bobak, Agnieszka Śmieszek

PMC · DOI: 10.3390/molecules31060989 · Molecules · 2026-03-16

## TL;DR

This study shows that biochar extract affects intestinal cells by changing cell survival and death processes, with effects depending on exposure time.

## Contribution

The study reveals time-dependent regulation of apoptosis and miRNA modulation by biochar extract in Caco-2 cells.

## Key findings

- BC-AE decreased cell viability after 24 h via late apoptosis.
- 72 h exposure increased necrosis without further viability loss.
- miR-15b and miR-21 were upregulated, suggesting a regulatory mechanism for cell survival.

## Abstract

Biochar, a carbon-rich material traditionally used to improve soil health and as a feed additive, has recently attracted attention for its potential biological activity. This study examined the effects of an aqueous biochar extract (BC-AE) on human intestinal epithelial cells (Caco-2), focusing on its influence on cell viability and apoptosis. The metabolic activity of Caco-2 cells exposed to BC-AE was first evaluated using an MTS assay. A concentration of 3 mg/mL, which promoted Caco-2 metabolic activity, was selected for further testing at 24 and 72 h. The effect of BC-AE on cell viability was assessed by epifluorescence microscopy (morphology) and flow cytometry (apoptosis profiling). The transcriptional response of cell viability-related genes (BAX, BAD, BCL-2, BCL-xL, MCL-1, P21, and P53) and microRNAs (miR-15b, miR-19, miR-21, miR-33a, miR-155, and miR-486) was analyzed by RT-qPCR. In parallel, selected proteins (BAD, BAX, BCL-2, and MCL-1) were examined by Western blotting. We showed that BC-AE decreased cell viability after 24 h via late apoptosis, while 72 h exposure increased necrosis without further viability loss. Both BAX and MCL-1 protein levels increased in Caco-2 cells after 72 h of BC-AE treatment, and miR-15b and miR-21 were upregulated, suggesting the involvement of a regulatory mechanism controlling cell survival. The obtained findings highlight the importance of considering both concentration and exposure duration when assessing biochar bioactivity and represent an additional contribution to the ongoing effort to better understand the biological role.

## Linked entities

- **Genes:** BAX (BCL2 associated X, apoptosis regulator) [NCBI Gene 581], BAD (BCL2 associated agonist of cell death) [NCBI Gene 572], BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596], Bcl2l1 (BCL2-like 1) [NCBI Gene 12048], MCL1 (MCL1 apoptosis regulator, BCL2 family member) [NCBI Gene 4170], CDKN1A (cyclin dependent kinase inhibitor 1A) [NCBI Gene 1026], TP53 (tumor protein p53) [NCBI Gene 7157]
- **Proteins:** BAD (BCL2 associated agonist of cell death), BAX (BCL2 associated X, apoptosis regulator), BCL2 (BCL2 apoptosis regulator), MCL1 (MCL1 apoptosis regulator, BCL2 family member)

## Full-text entities

- **Genes:** BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}, MIR486-1 (microRNA 486-1) [NCBI Gene 619554] {aka MIR486, MIRN486, hsa-mir-486, hsa-mir-486-1, mir-486-1}, MIR33A (microRNA 33a) [NCBI Gene 407039] {aka MIR33, MIRN33, MIRN33A, hsa-mir-33, hsa-mir-33a, miR-33}, H3P16 (H3 histone pseudogene 16) [NCBI Gene 644914] {aka H3.6, H3F3AP6, p21}, MIR155 (microRNA 155) [NCBI Gene 406947] {aka MIRN155, miRNA155, mir-155}, BAX (BCL2 associated X, apoptosis regulator) [NCBI Gene 581] {aka BCL2L4}, MIR21 (microRNA 21) [NCBI Gene 406991] {aka MIRN21, hsa-mir-21, miR-21, miRNA21}, BCL2L1 (BCL2 like 1) [NCBI Gene 598] {aka BCL-XL/S, BCL2L, BCLX, Bcl-X, PPP1R52}, MIR15B (microRNA 15b) [NCBI Gene 406949] {aka MIRN15B, hsa-mir-15b, miR-15b}, MCL1 (MCL1 apoptosis regulator, BCL2 family member) [NCBI Gene 4170] {aka BCL2L3, EAT, MCL1-ES, MCL1L, MCL1S, Mcl-1}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}
- **Diseases:** necrosis (MESH:D009336), Cytotoxicity (MESH:D064420)
- **Chemicals:** Biochar (MESH:C540010), carbon (MESH:D002244), Biochar Aqueous Extract (-)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13028679/full.md

## References

51 references — full list in the complete paper: https://tomesphere.com/paper/PMC13028679/full.md

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Source: https://tomesphere.com/paper/PMC13028679