# Modulation of Microbiome–Mitochondria Axis as a Novel Approach for Treatment of Obesity: A Scoping Review

**Authors:** Andreea Roxana Lista, Ciskey Vanessa Ayala Mosqueda, Rafael Palacios, María José García Mansilla, María Jesús Rodríguez Sojo, Ailec Ho Plágaro, Jorge Garcia Garcia, Julio Gálvez, Alba Rodríguez Nogales, Antonio Jesús Ruiz Malagón, María José Rodríguez Sánchez

PMC · DOI: 10.3390/medsci14010124 · Medical Sciences · 2026-03-06

## TL;DR

This review explores how the gut microbiome and mitochondria interact in obesity and how targeting this connection could offer new treatment strategies.

## Contribution

The paper introduces the microbiome–mitochondria axis as a novel therapeutic target for obesity, based on preclinical evidence.

## Key findings

- Gut microbiome produces metabolites that influence mitochondrial function and energy metabolism.
- Dysbiosis reduces beneficial metabolites, leading to mitochondrial dysfunction and obesity.
- Interventions like probiotics and dietary strategies show potential in restoring metabolic balance.

## Abstract

Background: Obesity is a multifactorial, chronic disease characterised by excessive fat accumulation, low-grade inflammation, and metabolic dysfunction. Emerging evidence suggests that the gut microbiome–mitochondria axis may play a significant role in the pathophysiology of obesity, particularly in regulating energy metabolism, inflammatory responses, and mitochondrial function. However, most mechanistic insights into this axis derive from preclinical animal studies, while human evidence remains limited and largely associative. Mitochondrial dysfunction disrupts cellular energy balance, increases reactive oxygen species production, and may exacerbate gut dysbiosis, further contributing to metabolic disturbances. In addition, factors such as micronutrient deficiencies also play a relevant role in obesity development and progression. Objectives: This review aims to examine the bidirectional interactions between the gut microbiome and mitochondrial systems in obesity, with a focus on the underlying molecular mechanisms and their potential as therapeutic targets. Methods: Evidence from experimental models and clinical studies was analysed to evaluate how modulation of the microbiome–mitochondria axis through probiotics, prebiotics, dietary strategies, and faecal microbiota transplantation influences mitochondrial function, inflammation, and metabolic regulation. Results: Preclinical studies indicate that the gut microbiome modulates mitochondrial activity through the production of bioactive metabolites, including short-chain fatty acids, secondary bile acids, and tryptophan-derived compounds, which influence mitochondrial efficiency, lipid metabolism, and glucose regulation. Dysbiosis reduces these beneficial metabolites, impairing mitochondrial signalling and promoting adiposity and insulin resistance. Interventions targeting this axis have shown potential in restoring metabolic balance, improving mitochondrial function, and mitigating obesity-related complications such as hyperlipidaemia and glucose intolerance. Conclusions: Targeting the microbiome–mitochondria axis represents a promising therapeutic strategy for obesity, with the evidence based largely on preclinical findings. However, further well-designed human studies are required to clarify causality, optimise interventions, assess long-term safety and efficacy, and establish standardised clinical protocols for implementation.

## Linked entities

- **Diseases:** obesity (MONDO:0011122), hyperlipidaemia (MONDO:0001336), glucose intolerance (MONDO:0001076)

## Full-text entities

- **Genes:** Fis1 (fission, mitochondrial 1) [NCBI Gene 66437] {aka 2010003O14Rik, Ttc11}, Prdx6-ps2 (peroxiredoxin 6 pseudogene 2) [NCBI Gene 384001] {aka Aop2-rs2, GPx*, Prdx6-rs2}, UCP1 (uncoupling protein 1) [NCBI Gene 7350] {aka SLC25A7, UCP}, Pparg (peroxisome proliferator activated receptor gamma) [NCBI Gene 19016] {aka Nr1c3, PPAR-gamma, PPAR-gamma2, PPARgamma, PPARgamma2}, Lep (leptin) [NCBI Gene 16846] {aka ob, obese}, HP (haptoglobin) [NCBI Gene 3240] {aka HP2ALPHA2, HPA1S}, Ptpn1 (protein tyrosine phosphatase, non-receptor type 1) [NCBI Gene 19246] {aka PTP-1B, PTP-HA2, PTP1B}, Ucp1 (uncoupling protein 1 (mitochondrial, proton carrier)) [NCBI Gene 22227] {aka Slc25a7, Ucp}, SLC2A4 (solute carrier family 2 member 4) [NCBI Gene 6517] {aka GLUT4}, Cat (catalase) [NCBI Gene 12359] {aka 2210418N07, Cas-1, Cas1, Cs-1}, Gip (gastric inhibitory polypeptide) [NCBI Gene 14607], INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, LPL (lipoprotein lipase) [NCBI Gene 4023] {aka HDLCQ11, LIPD}, Cebpa (CCAAT/enhancer binding protein alpha) [NCBI Gene 12606] {aka C/ebpalpha, CBF-A, Cebp}, BCL2L11 (BCL2 like 11) [NCBI Gene 10018] {aka BAM, BIM, BOD}, GLP1R (glucagon like peptide 1 receptor) [NCBI Gene 2740] {aka GLP-1, GLP-1-R, GLP-1R}, BCL2 (BCL2 apoptosis regulator) [NCBI Gene 596] {aka Bcl-2, PPP1R50}, Ppargc1a (peroxisome proliferative activated receptor, gamma, coactivator 1 alpha) [NCBI Gene 19017] {aka A830037N07Rik, Gm11133, PGC-1, PPARGC-1-alpha, Pgc-1alpha, Pgc1}, ND5 (NADH dehydrogenase subunit 5) [NCBI Gene 4540] {aka MTND5}, Gcg (glucagon) [NCBI Gene 14526] {aka GLP-1, Glu, PPG}, Gm12551 (perilipin 2 pseudogene) [NCBI Gene 101055843], RALA (RAS like proto-oncogene A) [NCBI Gene 5898] {aka HINCONS, RAL}, Adipoq (adiponectin, C1Q and collagen domain containing) [NCBI Gene 11450] {aka 30kDa, APN, Acdc, Acrp30, Ad, Adid}, Dnm1l (dynamin 1-like) [NCBI Gene 74006] {aka 6330417M19Rik, Dlp1, Dnmlp1, Drp1, python}, BAX (BCL2 associated X, apoptosis regulator) [NCBI Gene 581] {aka BCL2L4}, Retn (resistin) [NCBI Gene 57264] {aka ADSF, Fizz3, Rstn, Xcp4}, CYTB (cytochrome b) [NCBI Gene 4519] {aka MTCYB}
- **Diseases:** weight loss (MESH:D015431), cancers (MESH:D009369), overweight (MESH:D050177), metabolic diseases (MESH:D008659), weight gain (MESH:D015430), hyperlipidemia (MESH:D006949), adiposity (MESH:D018205), endothelial dysfunction (MESH:D014652), chronic inflammation (MESH:D007249), hyperplasia of adipocytes (MESH:D006965), lean mass loss (MESH:D013851), cardiometabolic complications (MESH:D024821), hypertension (MESH:D006973), hypertrophy (MESH:D006984), Obesity (MESH:D009765), T2D (MESH:D003924), weight regain (MESH:D055191), injury to (MESH:D014947), insulin resistance (MESH:D007333), irritable bowel disease (MESH:D043183), micronutrient deficiencies (MESH:D007153), diabetes (MESH:D003920), Mitochondrial Dysfunction (MESH:D028361), optic atrophy (MESH:D009896), glucose intolerance (MESH:D018149), cardiovascular diseases (MESH:D002318), Dysbiosis (MESH:D064806)
- **Chemicals:** BA (MESH:D001647), MitoTEMPO (MESH:C555916), glutathione (MESH:D005978), blood sugar (MESH:D001786), ROS (MESH:D017382), acetoacetate (MESH:C016635), glucose (MESH:D005947), Butyrate (MESH:D002087), acetate (MESH:D000085), Ce (MESH:D002563), free fatty acids (MESH:D005230), glycerophospholipid (MESH:D020404), MitoQ (MESH:C429014), SCFA (MESH:D005232), LPS (MESH:D008070), ATP (MESH:D000255), carbohydrate (MESH:D002241), 8-hydroxy-2'-deoxyguanosine (MESH:D000080242), fatty acid (MESH:D005227), pentacyclic triterpenoid (MESH:D053978), malondialdehyde (MESH:D008315), cholesterol (MESH:D002784), mangiferin (MESH:C013592), 12-hydroxylated bile acids (-), phenylalanine (MESH:D010649), beta-hydroxybutyrate (MESH:D020155), calcium (MESH:D002118), lipid (MESH:D008055), tryptophan (MESH:D014364), starches (MESH:D013213), Inulin (MESH:D007444), propionate (MESH:D011422), triglyceride (MESH:D014280), UDCA (MESH:D014580), rotundic acid (MESH:C572089)
- **Species:** Bilophila (genus) [taxon 35832], Oscillibacter (genus) [taxon 459786], Kluyveromyces marxianus (species) [taxon 4911], Rattus norvegicus (brown rat, species) [taxon 10116], Human alphaherpesvirus 1 (Herpes simplex virus type 1, no rank) [taxon 10298], Bacillota (clostridial firmicutes, phylum) [taxon 1239], Cyanobacteriota (blue-green algae, phylum) [taxon 1117], Latilactobacillus sakei (species) [taxon 1599], Bifidobacterium longum (species) [taxon 216816], Catenibacterium mitsuokai (species) [taxon 100886], Malassezia (genus) [taxon 55193], Kluyveromyces lactis (species) [taxon 28985], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Rhodotorula mucilaginosa (species) [taxon 5537], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], gut metagenome (species) [taxon 749906], Akkermansia muciniphila (species) [taxon 239935], Mus musculus (house mouse, species) [taxon 10090], Fusobacterium (genus) [taxon 848], [Clostridium] innocuum (species) [taxon 1522], Mucor (genus) [taxon 4830], Pseudomonadota (proteobacteria, phylum) [taxon 1224], Amedibacillus dolichus (species) [taxon 31971], Candida albicans (species) [taxon 5476], Roseburia (genus) [taxon 841], Canna indica (edible canna, species) [taxon 4628], Cladosporium (genus) [taxon 5498], Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13028557/full.md

## References

94 references — full list in the complete paper: https://tomesphere.com/paper/PMC13028557/full.md

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Source: https://tomesphere.com/paper/PMC13028557