# Extracellular Vesicles Associated Metabolites as Intercellular Signalling Mediators in Disease and Therapy

**Authors:** Abdul Qadeer, Abd Ullah, Muhammad Zahoor Khan, Khalaf F. Alsharif, Fuad M. Alzahrani, Khalid J. Alzahrani, Abdulwahab A. Abuderman

PMC · DOI: 10.3390/metabo16030207 · Metabolites · 2026-03-20

## TL;DR

This review explores how metabolites in extracellular vesicles, like exosomes, act as signaling molecules in diseases and therapies, highlighting their roles and challenges in study.

## Contribution

The paper introduces a quantitative framework to assess the functional relevance of exosomal metabolite delivery and evaluates their roles in various diseases.

## Key findings

- Exosomal metabolites can act as energy substrates, signaling molecules, redox cofactors, and oncometabolites.
- The review identifies technical challenges in exosomal metabolomics, such as contamination and isolation biases.
- Exosomal metabolite signaling has therapeutic potential in cancer and metabolic diseases.

## Abstract

Extracellular vesicles (EVs), particularly exosomes, have emerged as critical mediators of intercellular communication, yet the metabolite fraction of their cargo remains substantially underexplored relative to proteins and nucleic acids. This review synthesizes current knowledge on the exosomal metabolome as a functionally distinct intercellular signaling system with unique biophysical properties. We review the mechanisms proposed to govern metabolite encapsulation into exosomes, encompassing membrane transporter involvement, lipid raft partitioning, and binding to luminal proteins, and discuss the unresolved question of whether metabolite loading is selective or stochastic. Critically, we present a quantitative framework evaluating whether delivered metabolite quantities are sufficient to alter recipient cell metabolic pools, distinguishing receptor-mediated signaling from bulk substrate delivery. We also address methodological considerations including contamination artifacts and isolation-method biases that complicate interpretation of EV metabolomics data. Exosomal metabolites are reviewed across four functional categories: energy substrates (ATP, lactate, amino acids), signaling molecules (TCA cycle intermediates, eicosanoids, nucleotides), redox cofactors and antioxidants (NADH, glutathione), and oncometabolites. For each category, available evidence is critically appraised, distinguishing metabolites with direct mass spectrometric detection from those whose roles are inferred from parent-cell biology. The review examines the roles of exosomal metabolites in tumor-stroma metabolic symbiosis, immunometabolic regulation, inter-organ crosstalk in metabolic diseases including type 2 diabetes and non-alcoholic fatty liver disease, cancer metastasis, viral infections, and immune evasion. A quantitative framework is discussed to evaluate whether delivered metabolite quantities are sufficient to alter recipient cell metabolic pools, distinguishing receptor-mediated signaling from bulk substrate delivery. Technical challenges in exosomal metabolomics are reviewed, including the impact of isolation method on data quality, contamination artifacts, and current standardization gaps. Therapeutic implications of exosomal metabolite signaling are discussed, encompassing metabolite-loaded exosomes as therapeutic vehicles and exosomal metabolite loading as a pharmacological target. Integration of single-vesicle technologies with systems biology approaches is highlighted as a promising direction for advancing this field toward precision medicine applications in oncological and metabolic disorders.

## Linked entities

- **Chemicals:** ATP (PubChem CID 5957), lactate (PubChem CID 61503), NADH (PubChem CID 439153), glutathione (PubChem CID 124886)
- **Diseases:** type 2 diabetes (MONDO:0005148), non-alcoholic fatty liver disease (MONDO:0013209), cancer (MONDO:0004992)

## Full-text entities

- **Genes:** SNAR-E (small NF90 (ILF3) associated RNA E) [NCBI Gene 100170220], CD81 (CD81 molecule) [NCBI Gene 975] {aka CVID6, S5.7, TAPA1, TSPAN28}, S1PR4 (sphingosine-1-phosphate receptor 4) [NCBI Gene 8698] {aka EDG6, LPC1, S1P4, SLP4}, RAB27B (RAB27B, member RAS oncogene family) [NCBI Gene 5874] {aka C25KG}, SLC2A1 (solute carrier family 2 member 1) [NCBI Gene 6513] {aka CSE, DYT17, DYT18, DYT9, EIG12, GLUT}, KRAS (KRAS proto-oncogene, GTPase) [NCBI Gene 3845] {aka 'C-K-RAS, C-K-RAS, CFC2, K-RAS2A, K-RAS2B, K-RAS4A}, VPS4A (vacuolar protein sorting 4 homolog A) [NCBI Gene 27183] {aka CIMDAG, SKD1, SKD1A, SKD2, VPS4, VPS4-1}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, SUCNR1 (succinate receptor 1) [NCBI Gene 56670] {aka GPR91}, AHR (aryl hydrocarbon receptor) [NCBI Gene 196] {aka FVH3, RP85, bHLHe76}, COX8A (cytochrome c oxidase subunit 8A) [NCBI Gene 1351] {aka COX, COX8, COX8-2, COX8L, MC4DN15, VIII}, VPS36 (vacuolar protein sorting 36 homolog) [NCBI Gene 51028] {aka C13orf9, CGI-145, EAP45}, APOB (apolipoprotein B) [NCBI Gene 338] {aka FCHL2, FLDB, LDLCQ4, apoB-100, apoB-48}, CMPK2 (cytidine/uridine monophosphate kinase 2) [NCBI Gene 129607] {aka IBGC10, NDK, TMPK2, TYKi, UMP-CMPK2}, P2RX7 (purinergic receptor P2X 7) [NCBI Gene 5027] {aka P2X7}, MBTPS1 (membrane bound transcription factor peptidase, site 1) [NCBI Gene 8720] {aka CAOP, PCSK8, S1P, SEDKF, SKI-1}, ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, ENTPD1 (ectonucleoside triphosphate diphosphohydrolase 1) [NCBI Gene 953] {aka ATP-DPH, ATPDase, CD39, NTPDase-1, SPG64}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, SLC7A5 (solute carrier family 7 member 5) [NCBI Gene 8140] {aka 4F2LC, CD98, D16S469E, E16, LAT1, MPE16}, RAB7B (RAB7B, member RAS oncogene family) [NCBI Gene 338382] {aka RAB7}, RAB11A (RAB11A, member RAS oncogene family) [NCBI Gene 8766] {aka YL8}, PARP1 (poly(ADP-ribose) polymerase 1) [NCBI Gene 142] {aka ADPRT, ADPRT 1, ADPRT1, ARTD1, PARP, PARP-1}, LDHA (lactate dehydrogenase A) [NCBI Gene 3939] {aka GSD11, HEL-S-133P, LDHM, PIG19}, Hpgds (hematopoietic prostaglandin D synthase) [NCBI Gene 54486] {aka H-PGDS, Ptgds2}, SMPD2 (sphingomyelin phosphodiesterase 2) [NCBI Gene 6610] {aka ISC1, NSMASE, NSMASE1}, HMOX1 (heme oxygenase 1) [NCBI Gene 3162] {aka HMOX1D, HO-1, HSP32, bK286B10}, RAB27A (RAB27A, member RAS oncogene family) [NCBI Gene 5873] {aka GS2, HsT18676, RAB27, RAM}, HSP90AA1 (heat shock protein 90 alpha family class A member 1) [NCBI Gene 3320] {aka EL52, HEL-S-65p, HSP86, HSP89A, HSP90A, HSP90N}, Nfkb1 (nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105) [NCBI Gene 18033] {aka NF-KB1, NF-kappaB, NF-kappaB1, p105, p50, p50/p105}, ENO1 (enolase 1) [NCBI Gene 2023] {aka ENO1-IT1, ENO1L1, HEL-S-17, MPB1, NNE, PPH}, CAV1 (caveolin 1) [NCBI Gene 857] {aka BSCL3, CGL3, LCCNS, MSTP085, PPH3, VIP21}, Nfe2l2 (nuclear factor, erythroid derived 2, like 2) [NCBI Gene 18024] {aka Nrf2}, ARL8B (ARF like GTPase 8B) [NCBI Gene 55207] {aka ARL10C, Gie1}, FH (fumarate hydratase) [NCBI Gene 2271] {aka FMRD, HLRCC, HsFH, LRCC, MCL, MCUL1}, Mapk14 (mitogen-activated protein kinase 14) [NCBI Gene 26416] {aka CSBP2, Crk1, Csbp1, Mxi2, PRKM14, PRKM15}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, IDH1 (isocitrate dehydrogenase (NADP(+)) 1) [NCBI Gene 3417] {aka HEL-216, HEL-S-26, IDCD, IDH, IDP, IDPC}, HIF1A (hypoxia inducible factor 1 subunit alpha) [NCBI Gene 3091] {aka HIF-1-alpha, HIF-1A, HIF-1alpha, HIF1, HIF1-ALPHA, MOP1}, TSG101 (tumor susceptibility 101) [NCBI Gene 7251] {aka TSG10, VPS23}, NT5E (5'-nucleotidase ecto) [NCBI Gene 4907] {aka CALJA, CD73, E5NT, NT, NT5, NTE}, HK2 (hexokinase 2) [NCBI Gene 3099] {aka HKII, HXK2}, CD9 (CD9 molecule) [NCBI Gene 928] {aka BTCC-1, DRAP-27, MIC3, MRP-1, TSPAN-29, TSPAN29}, SDHB (succinate dehydrogenase complex iron sulfur subunit B) [NCBI Gene 6390] {aka CWS2, IP, MC2DN4, PGL4, PPGL4, SDH}, SLC16A1 (solute carrier family 16 member 1) [NCBI Gene 6566] {aka HHF7, MCT, MCT1, MCT1D}, STAM (signal transducing adaptor molecule) [NCBI Gene 8027] {aka STAM-1, STAM1}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, NQO1 (NAD(P)H quinone dehydrogenase 1) [NCBI Gene 1728] {aka DHQU, DIA4, DTD, NMOR1, NMORI, QR1}, SMPD3 (sphingomyelin phosphodiesterase 3) [NCBI Gene 55512] {aka NSMASE2}, VPS28 (VPS28 subunit of ESCRT-I) [NCBI Gene 51160] {aka CIIA}, CD2AP (CD2 associated protein) [NCBI Gene 23607] {aka CMS}, HGS (hepatocyte growth factor-regulated tyrosine kinase substrate) [NCBI Gene 9146] {aka HRS}, IDO1 (indoleamine 2,3-dioxygenase 1) [NCBI Gene 3620] {aka IDO, IDO-1, INDO}, PDCD6IP (programmed cell death 6 interacting protein) [NCBI Gene 10015] {aka AIP1, ALIX, DRIP4, HP95, MCPH29}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, APOA1 (apolipoprotein A1) [NCBI Gene 335] {aka AMYLD3, HPALP2, apo(a)}, RAB35 (RAB35, member RAS oncogene family) [NCBI Gene 11021] {aka H-ray, RAB1C, RAY}, DNAH8 (dynein axonemal heavy chain 8) [NCBI Gene 1769] {aka ATPase, SPGF46, hdhc9}, SRC (SRC proto-oncogene, non-receptor tyrosine kinase) [NCBI Gene 6714] {aka ASV, SRC1, THC6, c-SRC, p60-Src}
- **Diseases:** injury to (MESH:D014947), endometrial cancer (MESH:D016889), HIV-infected (MESH:D015658), infection (MESH:D007239), insulin resistance (MESH:D007333), peripheral (MESH:D010523), metastasis (MESH:D009362), prostate cancer (MESH:D011471), lung cancer (MESH:D008175), obesity (MESH:D009765), T2DM (MESH:D003924), NAFLD (MESH:D065626), cardiovascular conditions (MESH:D002318), Parkinson's disease (MESH:D010300), mitochondrial dysfunction (MESH:D028361), reperfusion injury (MESH:D015427), ischemia (MESH:D007511), breast and ovarian cancers (MESH:D061325), pancreatic cancer (MESH:D010190), neurodegenerative diseases (MESH:D019636), cytokine storm (MESH:D000080424), oncological and metabolic disorders (MESH:D000072716), Viral (MESH:D014777), Metabolic Diseases (MESH:D008659), dementias (MESH:D003704), autoimmunity (MESH:D001327), glioblastoma (MESH:D005909), Hypoxia (MESH:D000860), fibrosis (MESH:D005355), Cancer (MESH:D009369), Hypoxic (MESH:D002534), neurological disorders (MESH:D009461), HACE (MESH:D001929), cardiometabolic disease (MESH:D024821), Alzheimer's disease (MESH:D000544), EV (MESH:D004819), COVID-19 (MESH:D000086382), TAM (MESH:D020914), ovarian cancer (MESH:D010051), skin damage (MESH:D012871), inflammatory (MESH:D007249)
- **Chemicals:** calcium (MESH:D002118), PG (MESH:D011453), purine (MESH:C030985), organoheterocyclic compounds (MESH:D006571), citrate (MESH:D019343), lipid raft (-), luminal (MESH:D010634), Cholesterol (MESH:D002784), Purine nucleotides (MESH:D011685), paclitaxel (MESH:D017239), Lactate (MESH:D019344), carbon (MESH:D002244), TCA (MESH:D014233), fatty acid (MESH:D005227), AMP (MESH:D000249), oxygen (MESH:D010100), glutamine (MESH:D005973), leukotriene (MESH:D015289), acids (MESH:D000143), BCAA (MESH:D000597), 2-HG (MESH:C019417), 13C (MESH:C000615229), eicosanoid (MESH:D015777), sphingosine (MESH:D013110), arginine (MESH:D001120), adenosine (MESH:D000241), sphingomyelin (MESH:D013109), lysophosphatidic acid (MESH:C032881), deuterium (MESH:D003903), ADP (MESH:D000244), OptiPrep (MESH:C044834), TCA (MESH:D014238), propionate (MESH:D011422), Fumarate (MESH:D005650), Lipid (MESH:D008055), essential amino acids (MESH:D000601), doxorubicin (MESH:D004317), tryptophan (MESH:D014364), lysophospholipid (MESH:D008246), alpha-KG (MESH:D007656), guanosine (MESH:D006151), Succinate (MESH:D019802), Ceramide (MESH:D002518), GSSG (MESH:D019803), glycosphingolipids (MESH:D006028), phosphorylcholine (MESH:D010767), NAD+ (MESH:D009243), proton (MESH:D011522), ROS (MESH:D017382), Sphingosine-1-phosphate (MESH:C060506), phosphatidylserine (MESH:D010718), GW4869 (MESH:C468773), sphingolipids (MESH:D013107), hydrogen peroxide (MESH:D006861), lysophosphatidylcholines (MESH:D008244), glycerophosphocholine (MESH:D005997), glutamate (MESH:D018698), bile acid (MESH:D001647), temozolomide (MESH:D000077204), amino acids (MESH:D000596)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], gut metagenome (species) [taxon 749906], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** G12C, A2A

## Full text

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## Figures

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## References

244 references — full list in the complete paper: https://tomesphere.com/paper/PMC13028176/full.md

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Source: https://tomesphere.com/paper/PMC13028176