# Lifestyle Intervention Therapy Modulates Global DNA Methylation and Adipogenic Gene Expression in Severely Obese Hypogonadal Men

**Authors:** Siresha Bathina, Virginia Fuenmayor Lopez, Mia Prado, Salina Biene Teo, Dennis T. Villareal, Rui Chen, Clifford Qualls, Reina Armamento-Villareal

PMC · DOI: 10.3390/metabo16030198 · Metabolites · 2026-03-16

## TL;DR

Lifestyle changes like diet and exercise can alter DNA methylation and gene expression in severely obese men with low testosterone.

## Contribution

This study shows lifestyle interventions can reduce DNA methylation and specific gene expression in hypogonadal obese men.

## Key findings

- LSI therapy significantly reduced global DNA methylation and 5-methylcytosine levels.
- LSI decreased mRNA levels of DNMT1, DNMT3A, and DNMT3B.
- LSI markedly decreased CEBPα, FTO, and PPARγ mRNA expression.

## Abstract

Background/Objectives: Previous studies have suggested that lifestyle intervention (LSI) therapies involving diet and exercise can modulate DNA methylation; however, whether this occurs in severely obese hypogonadal men undergoing weight loss from diet and exercise remains unclear. Methods: In this study, we investigated the effects of weight loss from diet and exercise on global DNA methylation as well as on the mRNA expression of specific demethylation enzymes, DNMT1, DNMT3A, and DNMT3B—in peripheral blood mononuclear cells (PBMCs) and DNA methylation markers in DNA of severely obese hypogonadal men. This is a secondary analysis of samples of severely obese (body mass index of ≥35 kg/m2) hypogonadal men undergoing weight loss from diet and exercise in addition to an aromatase inhibitor (anastrozole) or placebo for a total of 12 months. Results: LSI therapy significantly reduced global DNA methylation and 5-methylcytosine (5-mC) levels, decreased DNMT1, DNMT3A, and DNMT3B (p < 0.05) mRNA levels and markedly decreased CEBPα, FTO, and PPARγ mRNA expression. The reduction in global methylation was independent of aromatase inhibitor use. Conclusions: In summary, our findings suggest that LSI induces epigenetic modifications in leukocytes, possibly through the regulation of DNMT gene expression. Future studies are warranted to clarify the mechanistic pathways linking lifestyle-induced epigenetic alterations to metabolic health outcomes.

## Linked entities

- **Genes:** DNMT1 (DNA methyltransferase 1) [NCBI Gene 1786], DNMT3A (DNA methyltransferase 3 alpha) [NCBI Gene 1788], DNMT3B (DNA methyltransferase 3 beta) [NCBI Gene 1789], CEBPA (CCAAT enhancer binding protein alpha) [NCBI Gene 1050], FTO (FTO alpha-ketoglutarate dependent dioxygenase) [NCBI Gene 79068], PPARG (peroxisome proliferator activated receptor gamma) [NCBI Gene 5468]
- **Chemicals:** anastrozole (PubChem CID 2187)
- **Diseases:** obesity (MONDO:0011122)

## Full-text entities

- **Genes:** CEBPA (CCAAT enhancer binding protein alpha) [NCBI Gene 1050] {aka C/EBP-alpha, CEBP}, CYP19A1 (cytochrome P450 family 19 subfamily A member 1) [NCBI Gene 1588] {aka ARO, ARO1, CPV1, CYAR, CYP19, CYPXIX}, DNMT3L (DNA methyltransferase 3 like) [NCBI Gene 29947], Dnmt1 (DNA methyltransferase 1) [NCBI Gene 13433] {aka Cxxc9, Dnmt, Dnmt1o, MCMT, MTase, Met-1}, INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, KCNQ1 (potassium voltage-gated channel subfamily Q member 1) [NCBI Gene 3784] {aka ATFB1, ATFB3, JLNS1, KCNA8, KCNA9, KVLQT1}, DNMT3B (DNA methyltransferase 3 beta) [NCBI Gene 1789] {aka FSHD4, ICF, ICF1, M.HsaIIIB}, TRDMT1 (tRNA aspartic acid methyltransferase 1) [NCBI Gene 1787] {aka DMNT2, DNMT2, MHSAIIP, PUMET, RNMT1}, Dnmt3b (DNA methyltransferase 3B) [NCBI Gene 13436] {aka MmuIIIB}, DNMT3A (DNA methyltransferase 3 alpha) [NCBI Gene 1788] {aka DNMT3A2, HESJAS, M.HsaIIIA, TBRS}, DNMT1 (DNA methyltransferase 1) [NCBI Gene 1786] {aka ADCADN, AIM, CXXC9, DNMT, HSN1E, MCMT}, Dnmt3a (DNA methyltransferase 3A) [NCBI Gene 13435] {aka MmuIIIA}, NPEPPS (aminopeptidase puromycin sensitive) [NCBI Gene 9520] {aka AAP-S, MP100, PSA}, TCF7L2 (transcription factor 7 like 2) [NCBI Gene 6934] {aka TCF-4, TCF4}, FTO (FTO alpha-ketoglutarate dependent dioxygenase) [NCBI Gene 79068] {aka ALKBH9, BMIQ14, GDFD, IFEX9}, PPARG (peroxisome proliferator activated receptor gamma) [NCBI Gene 5468] {aka CIMT1, FPLD3, GLM1, NR1C3, PPARG1, PPARG2}
- **Diseases:** COVID-19 (MESH:D000086382), obstructive sleep apnea (MESH:D020181), chronic inflammation (MESH:D007249), renal failure (MESH:D051437), adiposity (MESH:D018205), hypothalamic/pituitary disease (MESH:D007029), chronic liver disease (MESH:D008107), congestive heart failure (MESH:D006333), male hypogonadism (MESH:D005058), Weight (MESH:D015431), myocardial infarction (MESH:D009203), hyperparathyroidism (MESH:D006961), metabolic dysfunction (MESH:D008659), pulmonary disease (MESH:D008171), metabolic and endocrine disorders (MESH:D004700), hypogonadism (MESH:D007006), diabetes (MESH:D003920), hyperthyroidism (MESH:D006980), prostate carcinoma (MESH:D011472), osteomalacia (MESH:D010018), cardiopulmonary disease (MESH:D006323), systemic (MESH:D015619), cardiovascular disease (MESH:D002318), hypercortisolism (MESH:D003480), Obese (MESH:D009765), type 2 diabetes (MESH:D003924), Paget's dis (MESH:D003643), malabsorption (MESH:D008286), stroke (MESH:D020521), unstable angina (MESH:D000789), insulin resistance (MESH:D007333), injury to (MESH:D014947)
- **Chemicals:** S-adenosylmethionine (MESH:D012436), glucose (MESH:D005947), metformin (MESH:D008687), steroid (MESH:D013256), denosumab (MESH:D000069448), teriparatide (MESH:D019379), E2 (MESH:D004958), phenytoin (MESH:D010672), lipid (MESH:D008055), Testosterone (MESH:D013739), 5-Methyl Cytosine (MESH:D044503), cytosine (MESH:D003596), anastrozole (MESH:D000077384), oxygen (MESH:D010100), carbon (MESH:D002244), T (MESH:D014316), bisphosphonates (MESH:D004164), 5-MC% (-)
- **Species:** Rattus norvegicus (brown rat, species) [taxon 10116], Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** rs12592697, A1C, rs4646
- **Cell lines:** 3T3-L1 — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0123)

## Full text

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## Figures

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## References

39 references — full list in the complete paper: https://tomesphere.com/paper/PMC13028031/full.md

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Source: https://tomesphere.com/paper/PMC13028031