# Molecular Advances and Sustainable Strategies in Mushroom Production for Food Security: A Review

**Authors:** Dali V. Francis, Malu Kishorkumar, Zienab F. R. Ahmed, Elke G. Neumann, Shyam S. Kurup

PMC · DOI: 10.3390/jof12030205 · 2026-03-11

## TL;DR

This review explores how mushrooms can support sustainable food production by combining ecological and molecular research, especially in challenging environments.

## Contribution

The paper bridges ecological and molecular insights to guide sustainable mushroom production in resource-limited and arid regions.

## Key findings

- Current research focuses on yield, substrate reuse, and enzymatic degradation, but lacks attention to molecular and climate adaptation studies.
- Advancements in genomics and metabolomics are improving mushroom cultivation and bioactive compound production.
- Mycorrhizal and microbial interactions are crucial for nutrient cycling and environmental resilience in mushroom ecosystems.

## Abstract

Mushrooms offer a promising solution for sustainable food production due to their nutritional value, low resource requirements, and ability to grow in diverse environments. As interest in mushrooms grows, it is important to understand where current research is focused and where key gaps remain. A bibliometric analysis of 776 research articles indexed in Web of Science revealed a strong emphasis on yield, substrate reuse, and enzymatic degradation, but limited attention to molecular approaches, climate adaptation, and studies from arid regions such as the Middle East. Building on these findings, this review explores the ecological diversity of mushrooms and their adaptations across tropical, temperate, boreal, and arid ecosystems. It discusses the role of mycorrhizal and microbial interactions in nutrient cycling and environmental resilience, including desert truffle symbioses. Key pathways and genetic regulation involved in lignin degradation are outlined, along with recent advancements in transcriptomics, proteomics, genomics, metabolomics, and metagenomics that support improved cultivation and bioactive compound production. The review also addresses sustainable practices, such as microbiome integration and resource recycling, to enhance mushroom farming. The aim is to bring together ecological insights and molecular strategies to support sustainable mushroom production, particularly in regions facing resource and climate challenges.

## Full-text entities

- **Diseases:** injury to (MESH:D014947), BBD (MESH:D002095)
- **Chemicals:** phosphate (MESH:D010710), Mn3+ (-), gibberellins (MESH:D005875), methane (MESH:D008697), Lignin (MESH:D008031), ergosterol (MESH:D004875), amino acid (MESH:D000596), auxin (MESH:D007210), H2O2 (MESH:D006861), terpenoids (MESH:D013729), lactic acid (MESH:D019344), carbon (MESH:D002244), glycine betaine (MESH:D001622), Carbohydrates (MESH:D002241), triterpenoids (MESH:D014315), 2,3-butanediol (MESH:C026978), trehalose (MESH:D014199), pyruvate (MESH:D019289), ganoderic acids (MESH:C572163), lignocellulose (MESH:C036909), cellulose (MESH:D002482), flavonoids (MESH:D005419), iron (MESH:D007501), polysaccharides (MESH:D011134), proline (MESH:D011392), nitrogen (MESH:D009584), lipid (MESH:D008055), IAA (MESH:C030737), cytokinins (MESH:D003583), potassium (MESH:D011188), Sugar (MESH:D000073893), zinc (MESH:D015032), glycerophospholipids (MESH:D020404), mannitol (MESH:D008353), TCA (MESH:D014238), phosphorus (MESH:D010758), water (MESH:D014867)
- **Species:** Boletus edulis (king bolete, species) [taxon 36056], Mrakia (genus) [taxon 29901], Volvariella volvacea (paddy straw mushroom, species) [taxon 36659], Pseudomonas tolaasii (species) [taxon 29442], Pseudomonas putida (species) [taxon 303], Trichoderma (genus) [taxon 5543], Pleurotus giganteus (species) [taxon 1156456], Lentinula edodes (shiitake mushroom, species) [taxon 5353], Thermobifida (genus) [taxon 83677], Terfezia boudieri (species) [taxon 82571], Pleurotus tuoliensis (species) [taxon 879823], Ganoderma lucidum (species) [taxon 5315], Tricholoma matsutake (matsutake, species) [taxon 40145], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Streptomyces (genus) [taxon 1883], Aspergillus oryzae (species) [taxon 5062], Phoenix dactylifera (date palm, species) [taxon 42345], Tricholoma mesoamericanum (mesoamerican matsutake, species) [taxon 2497123], Mortierella (genus) [taxon 4855], Pleurotus eryngii (species) [taxon 5323], Bacillus subtilis (species) [taxon 1423], Hypsizygus marmoreus (species) [taxon 39966], Schizophyllum commune (species) [taxon 5334], Suillus luteus (species) [taxon 5384], Thermostaphylospora (genus) [taxon 2071601], Pleurotus ostreatus (oyster mushroom, species) [taxon 5322], Morchella esculenta (yellow morel, species) [taxon 39407], Homo sapiens (human, species) [taxon 9606], Amanita muscaria (fly agaric, species) [taxon 41956], Agaricus bisporus (common mushroom, species) [taxon 5341], Pseudomonas fluorescens (species) [taxon 294], Helianthemum sessiliflorum (species) [taxon 2650562], Bradyrhizobium (genus) [taxon 374], Flammulina velutipes (species) [taxon 38945], Bacillus amyloliquefaciens (species) [taxon 1390], Laetiporus sulphureus (chicken-of-the-woods, species) [taxon 5630], Podaxis pistillaris (species) [taxon 56191]

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13027901/full.md

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Source: https://tomesphere.com/paper/PMC13027901