# Targeted and Personalized Therapy for Difficult Benign Brain Tumors: A Review

**Authors:** Polina Chliapnikov, Mark Bernstein

PMC · DOI: 10.3390/jpm16030170 · 2026-03-21

## TL;DR

This review explores personalized treatment options for difficult benign brain tumors, focusing on molecular profiling and targeted therapies to improve outcomes.

## Contribution

The paper highlights the use of DNA methylation models and functional testing to guide individualized treatment for benign brain tumors.

## Key findings

- DNA methylation-based models predict post-surgical outcomes and radiotherapy responses in benign brain tumors.
- Target-directed treatments like cMET blockade and brigatinib show promise in preclinical models of schwannomas and PitNETs.
- Molecular profiling and functional assays are recommended to guide clinical decisions for difficult benign brain tumors.

## Abstract

Background: Difficult benign intracranial tumors (including meningiomas, schwannomas, neurofibromatosis-related tumors, and pituitary neuroendocrine tumors) have substantial morbidity in patients. Due to their limited treatment options, there is a need for individualized treatment beyond histological and surgical approaches. Objective: To summarize how novel treatment innovations have been implemented for these tumors, meningiomas and schwannomas are prioritized, followed by NF-associated neoplasms, and then pituitary neuroendocrine tumors in comparison to low-grade gliomas. Methods: We summarize the current knowledge relating to targeted therapies for gliomas, meningiomas, schwannomas, neurofibromatosis (NF) tumors, and pituitary neuroendocrine tumors to investigate an individual’s treatment options for difficult benign brain tumors. This review synthesizes evidence on tumor genomics and molecular markers, supported by methylation-based classification, immunohistochemistry, and functional assays, emphasizing current clinical applications. Evidence Synthesis: The recent data show that DNA methylation-based models can predict post-surgical outcomes and radiotherapy responses, enabling risk stratification and radiotherapy benefit prediction. Early signals support target-directed treatment, including cMET blockade that radiosensitizes NF2 schwannoma models, brigatinib-associated tumor shrinkage in NF2-deficient models, and PitNET organoid data. Conclusions: We support clinical decision-making that utilizes molecular profiling with functional testing to guide targeted treatment. We also identify evidence gaps such as biomarker-defined prospective trials that are needed for broader clinical implementation.

## Linked entities

- **Proteins:** MET (MET proto-oncogene, receptor tyrosine kinase)
- **Chemicals:** brigatinib (PubChem CID 68165256)
- **Diseases:** neurofibromatosis (MONDO:0018975)

## Full-text entities

- **Genes:** SSTR2 (somatostatin receptor 2) [NCBI Gene 6752] {aka SST2}, MGMT (O-6-methylguanine-DNA methyltransferase) [NCBI Gene 4255], TBX19 (T-box transcription factor 19) [NCBI Gene 9095] {aka TBS19, TPIT, dJ747L4.1}, SF1 (splicing factor 1) [NCBI Gene 7536] {aka BBP, D11S636, MBBP, ZCCHC25, ZFM1, ZNF162}, PTK2 (protein tyrosine kinase 2) [NCBI Gene 5747] {aka FADK, FADK 1, FAK, FAK1, FRNK, PPP1R71}, ALK (ALK receptor tyrosine kinase) [NCBI Gene 238] {aka ALK1, CD246, NBLST3}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, SMO (smoothened, frizzled class receptor) [NCBI Gene 6608] {aka CRJS, FZD11, Gx, PHLS, SMOH}, TERT (telomerase reverse transcriptase) [NCBI Gene 7015] {aka CMM9, DKCA2, DKCB4, EST2, PFBMFT1, TCS1}, PDGFRB (platelet derived growth factor receptor beta) [NCBI Gene 5159] {aka CD140B, IBGC4, IMF1, JTK12, KOGS, OPDKD}, TRAF7 (TNF receptor associated factor 7) [NCBI Gene 84231] {aka CAFDADD, RFWD1, RNF119}, VEGFA (vascular endothelial growth factor A) [NCBI Gene 7422] {aka L-VEGF, MVCD1, VEGF, VPF}, USP8 (ubiquitin specific peptidase 8) [NCBI Gene 9101] {aka HumORF8, PITA4, SPG59, UBPY}, FOXM1 (forkhead box M1) [NCBI Gene 2305] {aka FKHL16, FOXM1A, FOXM1B, FOXM1C, HFH-11, HFH11}, SLC7A1 (solute carrier family 7 member 1) [NCBI Gene 6541] {aka ATRC1, CAT-1, ERR, HCAT1, REC1L}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, IDH1 (isocitrate dehydrogenase (NADP(+)) 1) [NCBI Gene 3417] {aka HEL-216, HEL-S-26, IDCD, IDH, IDP, IDPC}, NF2 (NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor) [NCBI Gene 4771] {aka ACN, BANF, SCH, SWNV, merlin-1}, MET (MET proto-oncogene, receptor tyrosine kinase) [NCBI Gene 4233] {aka AUTS9, DA11, DFNB97, HGFR, RCCP2, c-Met}, SSTR5 (somatostatin receptor 5) [NCBI Gene 6755] {aka SS-5-R, SST5}, CTLA4 (cytotoxic T-lymphocyte associated protein 4) [NCBI Gene 1493] {aka ALPS5, CD, CD152, CELIAC3, CTLA-4, GRD4}, KLF4 (KLF transcription factor 4) [NCBI Gene 9314] {aka EZF, GKLF}, NF1 (neurofibromin 1) [NCBI Gene 4763] {aka NFNS, VRNF, WSS}, POU1F1 (POU class 1 homeobox 1) [NCBI Gene 5449] {aka CPHD1, GHF-1, PIT1, POU1F1a, Pit-1}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, KDR (kinase insert domain receptor) [NCBI Gene 3791] {aka CD309, FLK1, VEGFR, VEGFR2}, PGR (progesterone receptor) [NCBI Gene 5241] {aka NR3C3, PR}, MAP2K7 (mitogen-activated protein kinase kinase 7) [NCBI Gene 5609] {aka JNKK2, MAPKK7, MEK, MEK 7, MKK7, PRKMK7}, POMC (proopiomelanocortin) [NCBI Gene 5443] {aka ACTH, CLIP, LPH, MSH, NPP, OBAIRH}, BRAF (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 673] {aka B-RAF1, B-raf, BRAF-1, BRAF1, NS7, RAFB1}, SSTR3 (somatostatin receptor 3) [NCBI Gene 6753] {aka SS-3-R, SS3-R, SS3R, SSR-28, SST3}, TXK (TXK tyrosine kinase) [NCBI Gene 7294] {aka BTKL, PSCTK5, PTK4, RLK, TKL}, HGF (hepatocyte growth factor) [NCBI Gene 3082] {aka DFNB39, F-TCF, HGFB, HPTA, SF}, SST (somatostatin) [NCBI Gene 6750] {aka SMST, SST1}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, NFASC (neurofascin) [NCBI Gene 23114] {aka NEDCPMD, NF, NRCAML}, E2F4 (E2F transcription factor 4) [NCBI Gene 1874] {aka E2F-4}
- **Diseases:** corticotroph tumors (MESH:D049913), associated (MESH:D018886), functional impairment (MESH:D003072), Benign Brain Tumors (MESH:D001932), toxicity (MESH:D064420), NF2- (MESH:D016518), neurological deficits (MESH:D009461), pain (MESH:D010146), Seizures (MESH:D012640), NF)-related tumors (MESH:D000072716), VS (MESH:D009464), CNS (MESH:D002493), PN (MESH:D018318), schwannomatosis (MESH:C536641), endocrine dysfunction (MESH:D004700), cranial neuropathies (MESH:D003389), CNS tumor (MESH:D016543), vs (MESH:D015826), hearing loss (MESH:D034381), neurofibromatosis type 1 (MESH:D009456), Gliomas (MESH:D005910), PitNETs (MESH:D018358), injury to (MESH:D014947), Meningiomas (MESH:D008579), proliferative (MESH:D009220), pituitary adenomas (MESH:D010911), peripheral nerve sheath and intracranial tumors (MESH:D018317), NF-associated neoplasms (MESH:D009369), visual compromise (MESH:D014786), grade 2 and 3 tumors (MESH:D008224), Schwannomas (MESH:D009442), glioblastoma (MESH:D005909), disease (MESH:D004194), NF (MESH:D017253)
- **Chemicals:** trametinib (MESH:C560077), AZ628 (MESH:C000592454), gefitinib (MESH:D000077156), hydroxyurea (MESH:D006918), bosutinib (MESH:C471992), selumetinib (MESH:C517975), ceritinib (MESH:C586847), sorafenib (MESH:D000077157), everolimus (MESH:D000068338), nivolumab (MESH:D000077594), pembrolizumab (MESH:C582435), nintedanib (MESH:C530716), dabrafenib (MESH:C561627), sunitinib (MESH:D000077210), mirdametinib (MESH:C506614), erlotinib (MESH:D000069347), vorasidenib (MESH:C000716758), S9005 (-), brigatinib (MESH:C000598580), mifepristone (MESH:D015735), crizotinib (MESH:D000077547), vistusertib (MESH:C585537), lapatinib (MESH:D000077341), PTK787 (MESH:C404768), octreotide (MESH:D015282), GSK2256098 (MESH:C000600809), temozolomide (MESH:D000077204), imatinib (MESH:D000068877), mitoxantrone (MESH:D008942), bevacizumab (MESH:D000068258), cabozantinib (MESH:C558660)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** K409Q, AKT1 (E17K

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Source: https://tomesphere.com/paper/PMC13027854