# Metabolomic Study of 7-Ethyl-9-(N-methyl)aminomethyl-10-hydroxycamptothecin Derivative (NMe)—The Chemotherapeutic Drug Candidate Versus Irinotecan (IR) on a Mouse Model

**Authors:** Piotr Surynt, Beata Naumczuk, Magdalena Popławska, Magdalena Urbanowicz, Katarzyna Unrug-Bielawska, Magdalena Cybulska-Lubak, Zuzanna Sadowska-Markiewicz, Jerzy Sitkowski, Elżbieta Bednarek, Natalia Zeber-Lubecka, Lech Kozerski, Michał Mikula, Jerzy Ostrowski

PMC · DOI: 10.3390/metabo16030172 · 2026-03-05

## TL;DR

This study compares a new chemotherapy drug candidate, NMe, with irinotecan in mice, finding that NMe has a different and potentially safer metabolism profile.

## Contribution

The study identifies novel NMe-specific metabolites and compares their pharmacokinetics with irinotecan, revealing potential therapeutic advantages.

## Key findings

- NMe rapidly metabolizes and distributes more to the kidney and liver compared to irinotecan.
- NMe produces higher levels of SN-38 glucuronides, which may reduce gastrointestinal toxicity.
- Unique metabolites like 9-CH2-S-cysteine conjugate and NMe-formyl are specific to NMe.

## Abstract

Background: In this study, we aimed to compare metabolomic profiles, biodistribution, and detoxification patterns of the novel SN-38 derivative NMe with irinotecan (IR), and to identify NMe-specific metabolites to evaluate its preclinical pharmacokinetic advantages. Methods: In vivo ADME studies were conducted for NMe, a 9-aminomethyl SN-38 derivative, and IR following a single intraperitoneal dose of 40 mg/kg in mice. Additionally, ADMET properties were predicted using ADMETlab and SwissADME tools for comparison. Levels of NMe and irinotecan absorbed into plasma, distributed to tissues, and metabolized were monitored in liver, lung, spleen, kidney, and stool samples at 15, 30, and 60 min post-administration. Tissue extracts were analysed using high-performance liquid chromatography (HPLC), liquid chromatography–electrospray ionization quadrupole time-of-flight-tandem mass spectrometry (LC-ESI-QTOF-MS), and nuclear magnetic resonance (NMR) techniques after lyophilization and reconstitution. We compared the metabolomic profiles of irinotecan and NMe. Results: We identified and confirmed NMe-specific metabolites, including 9-CH2-S-cysteine conjugate, 9-CH2OH, and NMe-formyl. Notably, novel irinotecan metabolites (IR-OH and IR-ΔE) were detected in small amounts in kidney samples. In some cases, two literature-known photodegradation products of irinotecan were present. NMe was found to quickly metabolize with different distribution to tissues, significantly greater to kidney and liver. Two SN-38 glucuronides, SN-38G(α) and SN-38G(β), were detected corresponding to α- and β-anomers. Where it was possible, NMe, IR and SN-38 were quantified using external calibration curves. In IR group, controlled and prolonged release of SN-38 was confirmed in all samples, yet SN-38G was observed in minority only in plasma, kidney, or lungs. In NMe groups, great relative amounts of SN-38 and SN-38G were detected. Greater content of SN-38G in NMe group than in irinotecan is expected to contribute to modulation and alleviation of some side effects in irinotecan-involved therapies, such as gastrointestinal toxicities (GIT). Conclusions: NMe shows a distinct metabolic profile characterized by rapid biotransformation, higher systemic glucuronidation of SN-38, and formation of unique metabolites, suggesting a potentially wider therapeutic window and reduced toxicity compared with IR.

## Linked entities

- **Chemicals:** NMe (PubChem CID 6329), irinotecan (PubChem CID 60838), SN-38 (PubChem CID 104842)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Apc (APC, WNT signaling pathway regulator) [NCBI Gene 11789] {aka CC1, Min, mAPC}, Cyp1a2 (cytochrome P450, family 1, subfamily a, polypeptide 2) [NCBI Gene 13077] {aka CP12, CYPIA2, P450-3}, Ugt1a1 (UDP glucuronosyltransferase 1 family, polypeptide A1) [NCBI Gene 394436] {aka Gnt1, UDPGT 1-1, UGT1A01, Udpgt-1a, UgtBr1}, UGT1A1 (UDP glucuronosyltransferase family 1 member A1) [NCBI Gene 54658] {aka BILIQTL1, GNT1, HUG-BR1, UDPGT, UDPGT 1-1, UGT1}, Ppig (peptidyl-prolyl isomerase G (cyclophilin G)) [NCBI Gene 228005] {aka B230312B02Rik, CYP, SRCyp}, GUSB (glucuronidase beta) [NCBI Gene 2990] {aka BG, MPS7}, Ugt1a@ (UDP glycosyltransferase 1 family, polypeptide A cluster) [NCBI Gene 394431], Abcc2 (ATP-binding cassette, sub-family C member 2) [NCBI Gene 12780] {aka Abc30, Cmoat, Mrp2, cMRP}, Slc35a2 (solute carrier family 35 (UDP-galactose transporter), member A2) [NCBI Gene 22232] {aka Had-1, Had1, Sfc8, UGT, Ugalt}, Ces2h (carboxylesterase 2H) [NCBI Gene 436059] {aka Ces2, Gm5744}, CECR (cat eye syndrome chromosome region) [NCBI Gene 1055] {aka CES}, Cyp21a1 (cytochrome P450, family 21, subfamily a, polypeptide 1) [NCBI Gene 13079] {aka 21-OH, 21OH, 21OHA, 21OHB, CYP21OH-A, Cyp21}, Ces1g (carboxylesterase 1G) [NCBI Gene 12623] {aka CEH, Ces-1, Ces1, Ses-1}, Alk (anaplastic lymphoma kinase) [NCBI Gene 11682] {aka CD246, Tcrz}, Bche (butyrylcholinesterase) [NCBI Gene 12038] {aka C730038G20Rik}
- **Diseases:** injury to (MESH:D014947), death (MESH:D003643), colon, and lung cancer (MESH:D008175), neutropenia (MESH:D009503), NMe (OMIM:615387), cytotoxic (MESH:D064420), CL (MESH:D002971), acute toxicity (MESH:D000208), breast, leukaemia (MESH:D061325), GIT (MESH:D005767), C26 colon cancer (MESH:D015179), organ failure (MESH:D009102), NPC (MESH:D052556), ascites (MESH:D001201), P388 leukaemia (MESH:D007941), cancer (MESH:D009369), Respiratory toxicity (MESH:D012140), cardiac toxicity (MESH:D066126), diarrhoea (MESH:D003967), carcinogenicity (MESH:D011230)
- **Chemicals:** 9F15-NMe (-), aldehyde (MESH:D000447), clozapine (MESH:D003024), n-hexane (MESH:C026385), quinone (MESH:C004532), hydrogen (MESH:D006859), PDP2 (MESH:C116159), D2O (MESH:D017666), pancuronium (MESH:D010197), imatinib (MESH:D000068877), trastuzumab (MESH:D000068878), ethanol (MESH:D000431), -R (MESH:D001120), Lactone (MESH:D007783), alcohol (MESH:D000438), SN-38 glucuronides (MESH:C441475), PBB (MESH:D011075), topotecan (MESH:D019772), CPT-11 (MESH:D000077146), SN-38G (MESH:C114685), piperidine (MESH:C032727), flutamide (MESH:D005485), 5HT (MESH:D012701), caffeine (MESH:D002110), CH3CN (MESH:C032159), quinone methide (MESH:C068040), GSH (MESH:D005978), Cysteine (MESH:D003545), maleic acid (MESH:C030272), fam (MESH:C031179), amine (MESH:D000588), Ames (MESH:C017501), CPT (MESH:D002166), propranolol (MESH:D011433), tyrosine (MESH:D014443), diethyl-amine (MESH:C034281), nitrogen (MESH:D009584), glucose (MESH:D005947), NaCl (MESH:D012965), HCOOH (MESH:C030544), H2O (MESH:D014867), TPT (MESH:C026677)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606], Rattus norvegicus (brown rat, species) [taxon 10116]

## Figures

33 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13027767/full.md

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Source: https://tomesphere.com/paper/PMC13027767