# Renal Tubule-Specific Deletion of Nephrocystin 3 (Nphp3) Causes Infantile Nephronophthisis-like Phenotypes in Mice

**Authors:** Xuanjin Du, Chunyan Wang, Ye Fang, Gangqi Wang, Yihui Zhai, Qian Shen, Xiaoshan Tang, Hong Xu

PMC · DOI: 10.3390/ijms27062687 · 2026-03-15

## TL;DR

A new mouse model with kidney-specific deletion of Nphp3 mimics infantile nephronophthisis, showing early kidney cysts and fibrosis, and responds to drug treatments.

## Contribution

A renal tubule-specific Nphp3 knockout mouse model was created that better replicates infantile nephronophthisis in humans.

## Key findings

- The mouse model exhibits early-onset renal cysts and progressive fibrosis, mirroring infantile nephronophthisis.
- Treatments with tolvaptan and CI-1040 reduced cyst growth and improved kidney morphology.
- The model has a shortened lifespan and high urinary protein levels, reflecting severe kidney disease.

## Abstract

Patients with nephronophthisis caused by nephrocystin 3 (NPHP3) variants rapidly progress to end-stage kidney disease. However, existing Nphp3 mouse models fail to fully recapitulate the characteristics of this disease. We generated a renal tubule-specific Nphp3 knockout mouse model that more accurately mirrors the human disease course. The mouse model was first validated by confirming the loss of Nphp3 protein expression in renal tubules. Comprehensive phenotypic analyses were then performed to assess both renal and extrarenal manifestations. The origin of renal cysts was investigated, and the underlying mechanisms were further validated. We successfully generated a renal tubule-specific Nphp3 knockout mouse model (Cdh16-Cre; Nphp3flox/flox). These mice exhibited a markedly shortened lifespan (5–8 weeks) and developed key features of infantile nephronophthisis, including early-onset renal cysts originating from distal tubules and collecting ducts, progressive interstitial fibrosis that was evident by postnatal week 2, a rapid decline in kidney function, and increased urinary protein levels. Importantly, treatment with the vasopressin V2 receptor antagonist tolvaptan or the mitogen-activated extracellular signal-regulated kinase (MEK) inhibitor 2-(2-chloro-4-iodoanilino)-N-(cyclopropylmethoxy)-3,4-difluorobenzamide (CI-1040) significantly attenuated cyst growth and improved kidney morphology, confirming shared pathogenic pathways with other Nphp3 models. We established a renal tubule-specific Nphp3 knockout mouse model that accurately recapitulates the aggressive infantile form of nephronophthisis characterized by early cystogenesis, progressive fibrosis, and a shortened lifespan, and is ideal for evaluating novel interventions against this currently untreatable ciliopathy.

## Linked entities

- **Genes:** NPHP3 (nephrocystin 3) [NCBI Gene 27031]
- **Proteins:** NPHP3 (nephrocystin 3)
- **Chemicals:** tolvaptan (PubChem CID 216237), 2-(2-chloro-4-iodoanilino)-N-(cyclopropylmethoxy)-3,4-difluorobenzamide (PubChem CID 6918454), CI-1040 (PubChem CID 6918454)
- **Diseases:** nephronophthisis (MONDO:0019005), end-stage kidney disease (MONDO:0004375), ciliopathy (MONDO:0005308)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Avpr2 (arginine vasopressin receptor 2) [NCBI Gene 12000] {aka ADHR, DI1, DIR, ND1, V2R, VPV2R}, Cdh16 (cadherin 16) [NCBI Gene 12556], Nphp3 (nephronophthisis 3 (adolescent)) [NCBI Gene 74025] {aka 3632410F03Rik, C230078J01, D330020E01Rik, pcy}
- **Diseases:** ciliopathy (MESH:D000072661), fibrosis (MESH:D005355), Nephronophthisis (MESH:C537699), cyst (MESH:D003560), end-stage kidney disease (MESH:D007676)
- **Chemicals:** 2-(2-chloro-4-iodoanilino)-N-(cyclopropylmethoxy)-3,4-difluorobenzamide (-), tolvaptan (MESH:D000077602), CI-1040 (MESH:C120227)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]

## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13026956/full.md

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Source: https://tomesphere.com/paper/PMC13026956