# Metabolomics and Network Pharmacology-Based Screening of Candidate Hepatoprotective Metabolites in Fermented Dendrobium officinale Against Acetaminophen-Induced Liver Injury

**Authors:** Haiyue Pang, Hongtan Wu, Yu Zhong, Yiheng Deng, Yadong Feng, Gueyhorng Wang, Chihli Yu

PMC · DOI: 10.3390/cimb48030242 · Current Issues in Molecular Biology · 2026-02-25

## TL;DR

This study shows that fermenting Dendrobium officinale with yeast improves its ability to protect the liver from acetaminophen damage.

## Contribution

The study demonstrates that yeast fermentation enhances the hepatoprotective effects of Dendrobium officinale through metabolic and antioxidant changes.

## Key findings

- Fermented Dendrobium officinale extract showed better liver protection than nonfermented extract in mice.
- Fermentation increased antioxidant gene expression and reduced liver enzyme levels.
- Hemsleyanoside is suggested to contribute to the protective effects via molecular docking.

## Abstract

Dendrobium officinale exhibits hepatoprotective potential against acetaminophen-induced liver injury (AILI). Fermentation has been proposed as a strategy to enhance the utilization and efficacy of herbal medicines. However, whether yeast fermentation improves the hepatoprotective effects of D. officinale remains unclear. This study investigated whether fermentation of D. officinale flower extract with Saccharomyces cerevisiae (1002S) enhances its protective effects against AILI, compared with a nonfermented extract (DOFE). Hepatoprotective efficacy was evaluated in male C57BL/6 mice, which received 1002S or DOFE (500 mg/kg, oral gavage) for 7 days before an acute acetaminophen challenge. Untargeted metabolomics and network pharmacology analyses were used to characterize fermentation-associated metabolic alterations and to explore potential pathways related to the observed effects. Metabolomic profiling revealed distinct metabolic differences between 1002S and DOFE. Network pharmacology analysis indicated predicted targets of fermentation-associated metabolites were associated with the phosphoinositide 3-kinase (PI3K)/ protein kinase B (Akt) and Janus kinase (JAK)/signal transducer and activator of transcription proteins (STAT) signaling pathways. In vivo, 1002S more effectively alleviated hepatocellular necrosis and significantly reduced serum alanine aminotransferase (ALT) and aspartate aminotransferase (AST) levels. Increased expression of nuclear factor erythroid 2-related factor 2 (Nrf2), superoxide dismutase 2 (SOD2), solute carrier family 7 member 11 (SLC7A11) and glutathione peroxidase 4 (GPX4) was observed in liver tissues. Molecular docking suggested hemsleyanoside may contribute to these effects. Collectively, S. cerevisiae fermentation enhanced the antioxidant and hepatoprotective efficacy of D. officinale flower extract, supporting its potential development for AILI prevention.

## Linked entities

- **Genes:** GABPA (GA binding protein transcription factor subunit alpha) [NCBI Gene 2551], SOD2 (superoxide dismutase 2) [NCBI Gene 6648], SLC7A11 (solute carrier family 7 member 11) [NCBI Gene 23657], GPX4 (glutathione peroxidase 4) [NCBI Gene 2879]
- **Chemicals:** acetaminophen (PubChem CID 1983), hemsleyanoside (PubChem CID 44257722)
- **Species:** Dendrobium officinale (taxon 142615), Saccharomyces cerevisiae (taxon 4932)

## Full-text entities

- **Genes:** Src (src proto-oncogene, non-receptor tyrosine kinase) [NCBI Gene 20779] {aka pp60c-src}, Jak2 (Janus kinase 2) [NCBI Gene 16452] {aka Fd17}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, Ptpn11 (protein tyrosine phosphatase, non-receptor type 11) [NCBI Gene 19247] {aka 2700084A17Rik, PTP1D, PTP2C, SAP-2, SH-PTP2, SH-PTP3}, Cat (catalase) [NCBI Gene 12359] {aka 2210418N07, Cas-1, Cas1, Cs-1}, Sod2 (superoxide dismutase 2, mitochondrial) [NCBI Gene 20656] {aka MnSOD, Sod-2}, Mapk8 (mitogen-activated protein kinase 8) [NCBI Gene 26419] {aka JNK, JNK1, Prkm8, SAPK1}, SOD2 (superoxide dismutase SOD2) [NCBI Gene 856399], Cyp21a1 (cytochrome P450, family 21, subfamily a, polypeptide 1) [NCBI Gene 13079] {aka 21-OH, 21OH, 21OHA, 21OHB, CYP21OH-A, Cyp21}, Ms6hm (minisatellite 6 hypermutable) [NCBI Gene 17653] {aka PC-1}, Cyp2e1 (cytochrome P450, family 2, subfamily e, polypeptide 1) [NCBI Gene 13106] {aka CYPIIE1, Cyp2e}, NFE2L2 (NFE2 like bZIP transcription factor 2) [NCBI Gene 4780] {aka IMDDHH, NRF2, Nrf-2}, Pdgfrb (platelet derived growth factor receptor, beta polypeptide) [NCBI Gene 18596] {aka CD140b, PDGFR-1, Pdgfr}, Keap1 (kelch-like ECH-associated protein 1) [NCBI Gene 50868] {aka INRF2, mKIAA0132}, Pik3cb (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 74769] {aka 1110001J02Rik, p110beta}, SLC7A11 (solute carrier family 7 member 11) [NCBI Gene 23657] {aka CCBR1, xCT}, Gpx4 (glutathione peroxidase 4) [NCBI Gene 625249] {aka GPx-4, GSHPx-4, PHGPx, mtPHGPx, snGPx}, Hmgb1 (high mobility group box 1) [NCBI Gene 15289] {aka HMG-1, Hmg1, SBP-1, p30}, GPX4 (glutathione peroxidase 4) [NCBI Gene 2879] {aka GPx-4, GSHPx-4, MCSP, PHGPx, SMDS, snGPx}, Pik3r1 (phosphoinositide-3-kinase regulatory subunit 1) [NCBI Gene 18708] {aka PI3K, p50alpha, p55alpha, p85alpha}, Nfe2l2 (nuclear factor, erythroid derived 2, like 2) [NCBI Gene 18024] {aka Nrf2}, Actb (actin, beta) [NCBI Gene 11461] {aka Actx, E430023M04Rik, beta-actin}, Slc7a11 (solute carrier family 7 (cationic amino acid transporter, y+ system), member 11) [NCBI Gene 26570] {aka 9930009M05Rik, sut, xCT}, Egfr (epidermal growth factor receptor) [NCBI Gene 13649] {aka 9030024J15Rik, Erbb, Errb1, Errp, Wa5, wa-2}, Slc17a5 (solute carrier family 17 (anion/sugar transporter), member 5) [NCBI Gene 235504] {aka 4631416G20Rik, 4732491M05, AST, ISSD, NSD, SD}, Gpt (glutamic pyruvic transaminase, soluble) [NCBI Gene 76282] {aka 1300007J06Rik, 2310022B03Rik, ALT, ALT1, Gpt-1, Gpt1}, Il1b (interleukin 1 beta) [NCBI Gene 16176] {aka IL-1beta, Il-1b}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, Ptk2 (PTK2 protein tyrosine kinase 2) [NCBI Gene 14083] {aka FADK 1, FAK, FRNK, Fadk, p125FAK}, POTEF (POTE ankyrin domain family member F) [NCBI Gene 728378] {aka A26C1B, POTE2alpha, POTEACTIN}, Pik3cd (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta) [NCBI Gene 18707] {aka 2410099E07Rik, 2610208K16Rik, p110delta}, Pik3ca (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) [NCBI Gene 18706] {aka 6330412C24Rik, caPI3K, p110, p110alpha}
- **Diseases:** hepatic inflammation (MESH:D007249), hepatocyte necrosis (MESH:D009336), Liver Injury (MESH:D017093), ALF (MESH:D017114), tumor (MESH:D009369), DILI (MESH:D056486), overdose (MESH:D062787), hepatocellular necrosis (MESH:D047508), mitochondrial damage (MESH:D028361), respiratory distress (MESH:D012128), cytotoxicity (MESH:D064420), hepatoblastoma (MESH:D018197), injury to (MESH:D014947)
- **Chemicals:** methoxyamine (MESH:C005214), glucose (MESH:D005947), nitrogen (MESH:D009584), saline (MESH:D012965), formic acid (MESH:C030544), glycerophospholipids (MESH:D020404), MTT (MESH:C070243), polyacrylamide (MESH:C016679), Water (MESH:D014867), BCA (MESH:C047117), ATP (MESH:D000255), steroid (MESH:D013256), 2,2-diphenyl-1- picrylhydrazyl (MESH:C004931), Ascorbic acid (MESH:D001205), hematoxylin (MESH:D006416), Tween-20 (MESH:D011136), CO2 (MESH:D002245), L-aspartate (MESH:D001224), Trolox (MESH:C010643), pyruvate (MESH:D019289), flavonoids (MESH:D005419), PBS (MESH:D007854), GSH (MESH:D005978), methanol (MESH:D000432), penicillin (MESH:D010406), H&amp;E (MESH:D006371), H2O2 (MESH:D006861), ice (MESH:D007053), DMSO (MESH:D004121), paraffin (MESH:D010232), ROS (MESH:D017382), phosphate (MESH:D010710), alpha-ketoglutarate (MESH:D007656), acetonitrile (MESH:C032159), 3-(4,5-dimethylthiazol-2yl)-2,5-diphenyltetrazolium bromide (MESH:C022616), N-acetyl-p-benzoquinone imine (MESH:C028473), xylene (MESH:D014992), Free radical (MESH:D005609), 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) (MESH:C002502), lipid (MESH:D008055), polysaccharides (MESH:D011134), Oxaloacetate (MESH:D062907), TRIzol (MESH:C411644), BSTFA (MESH:C047270), CCK8 (MESH:D012844), formazan (MESH:D005562), sodium dodecyl sulfate (MESH:D012967), iron (MESH:D007501), eosin (MESH:D004801), paraformaldehyde (MESH:C003043), peroxides (MESH:D010545), L-glutamine (MESH:D005973), ximoprofen (MESH:C061944), chloroform (MESH:D002725), superoxide (MESH:D013481), oxygen (MESH:D010100), TBARS (MESH:D017392), ethanol (MESH:D000431), MDA (MESH:D008315), D. officinale flower extract (-)
- **Species:** Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Dendrobium officinale (species) [taxon 142615], Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** HepG2 — Homo sapiens (Human), Hepatoblastoma, Cancer cell line (CVCL_0027), C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU), CICC 1002 — Homo sapiens (Human), Congenital hydrocephalus, Finite cell line (CVCL_9D35)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13026016/full.md

## References

66 references — full list in the complete paper: https://tomesphere.com/paper/PMC13026016/full.md

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Source: https://tomesphere.com/paper/PMC13026016