# Discovery of Tyrosinase Inhibitors from Lysinibacillus sp. JNUCC 52 via Genome Mining, Secondary Metabolites Profiling, and In Silico Analysis

**Authors:** Xuhui Liang, Yang Xu, Chang-Gu Hyun

PMC · DOI: 10.3390/cimb48030280 · 2026-03-05

## TL;DR

Researchers found a compound from a Lysinibacillus strain that strongly inhibits tyrosinase, an enzyme involved in melanin production, suggesting potential for therapeutic and cosmetic use.

## Contribution

The study identifies cyclo(L-Pro-L-Leu) as a potent tyrosinase inhibitor from Lysinibacillus sp. JNUCC 52, supported by in silico and experimental analyses.

## Key findings

- Cyclo(L-Pro-L-Leu) showed strong tyrosinase inhibition with an IC50 of 79.5 ± 2.3 μM.
- In silico analysis confirmed favorable drug-like properties and stable binding to tyrosinase.
- Lysinibacillus sp. JNUCC 52 is a promising source of bioactive secondary metabolites.

## Abstract

Tyrosinase is a key enzyme in melanin biosynthesis, and natural inhibitors have potential therapeutic and cosmetic applications. Lysinibacillus sp. JNUCC 52, a member of the Bacillaceae family, shows potential for producing bioactive secondary metabolites. However, the tyrosinase inhibitory potential of metabolites from this strain has not been previously reported. This study investigates its genomic features, secondary metabolites, and tyrosinase inhibitory activity to identify promising enzyme inhibitors. Integrated COG, GO, and KEGG annotation revealed a metabolically robust network supporting secondary metabolite biosynthesis. Chemical investigation of the ethyl acetate extract yielded five known compounds, among which cyclo(L-Pro-L-Leu) displayed the strongest tyrosinase inhibition (IC50 = 79.5 ± 2.3 μM), whereas uracil showed weaker activity. In silico ADMET and drug-likeness analyses suggested favorable pharmacokinetic properties and compliance with major drug-likeness rules for cyclo(L-Pro-L-Leu). Molecular docking and molecular dynamics simulations demonstrated stable binding to mushroom tyrosinase (mTYR) and human TYRP1, supported by MM/GBSA and residue decomposition analyses identifying key stabilizing residues. Together, these results provide mechanistic insight into tyrosinase inhibition and highlight cyclo(L-Pro-L-Leu) as a minimal lead-like scaffold, while establishing strain JNUCC 52 as a promising microbial source of bioactive metabolites.

## Linked entities

- **Proteins:** LOC103429692 (polyphenol oxidase, chloroplastic-like), TYRP1 (tyrosinase related protein 1)
- **Chemicals:** cyclo(L-Pro-L-Leu) (PubChem CID 7074739), uracil (PubChem CID 1174), ethyl acetate (PubChem CID 8857)
- **Species:** Lysinibacillus sp. JNUCC-52 (taxon 2792480)

## Full-text entities

- **Genes:** MAPK8 (mitogen-activated protein kinase 8) [NCBI Gene 5599] {aka JNK, JNK-46, JNK1, JNK1A2, JNK21B1/2, PRKM8}, NFE2L2 (NFE2 like bZIP transcription factor 2) [NCBI Gene 4780] {aka IMDDHH, NRF2, Nrf-2}, HMOX1 (heme oxygenase 1) [NCBI Gene 3162] {aka HMOX1D, HO-1, HSP32, bK286B10}, PGP (phosphoglycolate phosphatase) [NCBI Gene 283871] {aka AUM, G3PP, PGPase}, TYR (tyrosinase) [NCBI Gene 7299] {aka ATN, CMM8, OCA1, OCA1A, OCAIA, SHEP3}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, KCNH2 (potassium voltage-gated channel subfamily H member 2) [NCBI Gene 3757] {aka ERG-1, ERG1, H-ERG, HERG, HERG1, Kv11.1}, TYRP1 (tyrosinase related protein 1) [NCBI Gene 7306] {aka CAS2, CATB, GP75, OCA3, TRP, TRP1}
- **Diseases:** inflammatory (MESH:D007249), carcinoma (MESH:D009369), melanoma (MESH:D008545), Toxicity (MESH:D064420), injury to (MESH:D014947)
- **Chemicals:** IAA (MESH:C030737), water (MESH:D014867), silica gel (MESH:D058428), L-tyrosine (MESH:D014443), indole (MESH:C030374), melanin (MESH:D008543), Cyclo(L-Pro-L-Tyr) (MESH:C085319), Uracil (MESH:D014498), carbohydrate (MESH:D002241), tropolone (MESH:D014334), Arbutin (MESH:D001104), metal (MESH:D008670), ethyl laurate (MESH:C007677), -Leu (MESH:D007930), lipopeptide (MESH:D055666), ethyl acetate (MESH:C007650), alpha-amino acids (MESH:D000596), azelaic acid (MESH:C010038), Na+ (MESH:D012964), potassium phosphate (MESH:C013216), glycerol (MESH:D005990), 2H (MESH:D003903), lipid (MESH:D008055), 2,5-diketopiperazine (MESH:C010939), agar (MESH:D000362), Bacilysin (MESH:C006674), Cl- (MESH:D002713), oxygen (MESH:D010100), 3H (MESH:D014316), C (MESH:D002244), 13C (MESH:C000615229), dopachrome (MESH:C001123), Bacitracin (MESH:D001414), heavy metal (MESH:D019216), dipeptide (MESH:D004151), kojic acid (MESH:C011890), Hydrogen (MESH:D006859), undecaprenyl pyrophosphate (MESH:C088139), 2,5-DKP (-)
- **Species:** Malassezia (genus) [taxon 55193], Bacillus velezensis FZB42 (strain) [taxon 326423], Aspergillus (genus) [taxon 5052], Streptomyces (genus) [taxon 1883], Lysinibacillus sp. (species) [taxon 1869345], Pseudomonas aeruginosa (species) [taxon 287], Lysinibacillus sphaericus (species) [taxon 1421], Bacillus anthracis (anthrax bacterium, species) [taxon 1392], Agaricus bisporus (common mushroom, species) [taxon 5341], Homo sapiens (human, species) [taxon 9606], Lysinibacillus fusiformis (species) [taxon 28031]
- **Cell lines:** B16F10 — Mus musculus (Mouse), Mouse melanoma, Cancer cell line (CVCL_0159), JNUCC 52 — Mus musculus (Mouse), Hybridoma (CVCL_J927)

## Figures

16 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13025830/full.md

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Source: https://tomesphere.com/paper/PMC13025830