# SMR Peptide Modulates Tumor-Derived Extracellular Vesicles microRNA and Inflammatory Transcript Signatures in TNBC

**Authors:** Ming-Bo Huang, Fengxia Yan, Uswa Jadoon, Jennifer Y. Wu, Dara Brena, Erica L. Johnson, Jonathan Stiles, Lily Yang, Brian M. Rivers, Vincent C. Bond

PMC · DOI: 10.3390/cells15060550 · 2026-03-19

## TL;DR

A synthetic peptide called SMRwt changes the microRNA and inflammatory signals in tumor cells, potentially offering a new treatment for aggressive breast cancer.

## Contribution

SMRwt is shown to simultaneously restore tumor-suppressive microRNAs and reduce inflammasome-driven inflammation in TNBC.

## Key findings

- SMRwt treatment enriched 11 tumor-suppressive microRNAs linked to reduced cancer progression.
- SMRwt reduced inflammasome-associated cytokines like IL-1β in TNBC cells.
- SMRwt inhibits NLRP3 inflammasome signaling by suppressing ASC-mediated caspase-1 activation.

## Abstract

What changes with SMRwt? Extracellular vesicle microRNAs shift to 
tumor suppression.

What signaling is affected? Inflammasome cytokine transcripts are 
reduced in cells.

Triple-negative breast cancer (TNBC) is an aggressive subtype lacking targeted therapies and characterized by pronounced heterogeneity and widespread dysregulation of microRNAs (miRNAs) that influence epithelial-to-mesenchymal transition (EMT) and metastasis. Tumor-derived extracellular vesicles (tEVs) further contribute to TNBC progression by transporting oncogenic cargo that can enhance pro-inflammatory signaling. The synthetic SMRwt peptide has been suggested to modulate oncogenic pathways; however, its effects on EV miRNA composition and inflammatory transcript profiles in TNBC remain unclear. Here, we investigated whether SMRwt alters tEV-associated miRNAs and cytokine transcript signatures relevant to EMT and inflammasome-linked pathways. Extracellular vesicles were isolated from SMR-treated and untreated MDA-MB-231 cells, followed by nanoparticle tracking analysis and small RNA sequencing. SMRwt treatment enriched 11 tumor-suppressive miRNAs (including Let-7a-5p, Let-7b-5p, miR-24-3p, miR-26b-5p, miR-92a-3p, miR-93-5p, and miR-496) previously associated with the regulation of proliferation, EMT, migration, and metastasis. We also observed modest, non-significant decreases (1.01–1.27-fold) in oncogenic miR-1200, miR-374a-5p, and miR-937-3p, which have been implicated in the progression of breast, lung, and bone malignancies. Complementary transcriptomic profiling using the NanoString nCounter Breast Cancer 360 Gene Expression Panel (NanoString Technologies, Inc., Seattle, CA, USA) demonstrated reduced expression of inflammasome-associated cytokines in TNBC cells relative to non-tumorigenic controls, including a log2 fold change of −1.15 for IL 1β (MDA-MB-231 vs. MCF10A). These transcript-level changes suggest potential modulation. Additionally, SMRwt suppresses ASC-mediated caspase-1 activation and reduces IL-1β secretion, thereby inhibiting NLRP3 inflammasome signaling. Therefore, we infer that SMRwt simultaneously restores tumor-suppressive miRNA networks and suppresses inflammasome-driven inflammation, supporting its potential as a dual-target therapeutic strategy for TNBC.

## Linked entities

- **Proteins:** STS (steroid sulfatase), Caspase1 (caspase-1), IL1B (interleukin 1 beta)
- **Diseases:** breast cancer (MONDO:0004989)

## Full-text entities

- **Genes:** AXL (AXL receptor tyrosine kinase) [NCBI Gene 558] {aka ARK, AXL3, JTK11, Tyro7, UFO}, AKT1 (AKT serine/threonine kinase 1) [NCBI Gene 207] {aka AKT, PKB, PKB-ALPHA, PRKBA, RAC, RAC-ALPHA}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, ADIPOQ (adiponectin, C1Q and collagen domain containing) [NCBI Gene 9370] {aka ACDC, ACRP30, ADIPQTL1, ADPN, APM-1, APM1}, ERBB2 (erb-b2 receptor tyrosine kinase 2) [NCBI Gene 2064] {aka CD340, HER-2, HER-2/neu, HER2, MLN 19, MLN-19}, MIR25 (microRNA 25) [NCBI Gene 407014] {aka MIRN25, hsa-mir-25, miR-25}, CXCL1 (C-X-C motif chemokine ligand 1) [NCBI Gene 2919] {aka FSP, GRO1, GROa, MGSA, MGSA-a, NAP-3}, VIM (vimentin) [NCBI Gene 7431], IL18 (interleukin 18) [NCBI Gene 3606] {aka IGIF, IL-18, IL-1g, IL1F4}, HAS1 (hyaluronan synthase 1) [NCBI Gene 3036] {aka HAS}, MARCHF8 (membrane associated ring-CH-type finger 8) [NCBI Gene 220972] {aka CMIR, MARCH-VIII, MARCH8, MIR, RNF178, c-MIR}, NFKB1 (nuclear factor kappa B subunit 1) [NCBI Gene 4790] {aka CVID12, EBP-1, KBF1, NF-kB, NF-kB1, NF-kappa-B1}, PYCARD (PYD and CARD domain containing) [NCBI Gene 29108] {aka ASC, CARD5, TMS, TMS-1, TMS1}, MIR32 (microRNA 32) [NCBI Gene 407036] {aka MIRN32, hsa-mir-32, miR-32, miRNA32}, MIR29A (microRNA 29a) [NCBI Gene 407021] {aka MIRN29, MIRN29A, hsa-mir-29, hsa-mir-29a, miRNA29A, mir-29a}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, EGFR (epidermal growth factor receptor) [NCBI Gene 1956] {aka ERBB, ERBB1, ERRP, HER1, NISBD2, NNCIS}, IL2 (interleukin 2) [NCBI Gene 3558] {aka IL-2, TCGF, lymphokine}, CXCL10 (C-X-C motif chemokine ligand 10) [NCBI Gene 3627] {aka C7, IFI10, INP10, IP-10, SCYB10, crg-2}, MIR21 (microRNA 21) [NCBI Gene 406991] {aka MIRN21, hsa-mir-21, miR-21, miRNA21}, MIR130B (microRNA 130b) [NCBI Gene 406920] {aka MIRN130B, mir-130b}, CASP1 (caspase 1) [NCBI Gene 834] {aka ICE, IL1BC, P45}, ZEB2 (zinc finger E-box binding homeobox 2) [NCBI Gene 9839] {aka HSPC082, SIP-1, SIP1, SMADIP1, ZFHX1B}, MIR1200 (microRNA 1200) [NCBI Gene 100302113] {aka MIRN1200, hsa-mir-1200}, SNAI1 (snail family transcriptional repressor 1) [NCBI Gene 6615] {aka SLUGH2, SNA, SNAH, SNAIL, SNAIL1, dJ710H13.1}, MIR323A (microRNA 323a) [NCBI Gene 442897] {aka MIR323, MIRN323, hsa-mir-323, hsa-mir-323a, mir-323a}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}, LYPD4 (LY6/PLAUR domain containing 4) [NCBI Gene 147719] {aka SMR}, IL21 (interleukin 21) [NCBI Gene 59067] {aka CVID11, IL-21, Za11}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, MIR7975 (microRNA 7975) [NCBI Gene 102466872] {aka hsa-mir-7975}, NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548] {aka AGTAVPRL, AII, AVP, C1orf7, CIAS1, CLR1.1}, CXCL8 (C-X-C motif chemokine ligand 8) [NCBI Gene 3576] {aka GCP-1, GCP1, IL8, LECT, LUCT, LYNAP}, IL22 (interleukin 22) [NCBI Gene 50616] {aka IL-21, IL-22, IL-D110, IL-TIF, ILTIF, TIFIL-23}, PGR (progesterone receptor) [NCBI Gene 5241] {aka NR3C3, PR}, IL17A (interleukin 17A) [NCBI Gene 3605] {aka CTLA-8, CTLA8, IL-17, IL-17A, IL17, ILA17}, MYC (MYC proto-oncogene, bHLH transcription factor) [NCBI Gene 4609] {aka MRTL, MYCC, bHLHe39, c-Myc}, MAP2K7 (mitogen-activated protein kinase kinase 7) [NCBI Gene 5609] {aka JNKK2, MAPKK7, MEK, MEK 7, MKK7, PRKMK7}, EREG (epiregulin) [NCBI Gene 2069] {aka EPR, ER, Ep}, ZEB1 (zinc finger E-box binding homeobox 1) [NCBI Gene 6935] {aka AREB6, BZP, DELTAEF1, FECD6, NIL2A, PPCD3}, LIN28A (lin-28 RNA binding posttranscriptional regulator A) [NCBI Gene 79727] {aka CSDD1, LIN-28, LIN28, ZCCHC1, lin-28A}, MIR496 (microRNA 496) [NCBI Gene 574454] {aka MIRN496, hsa-mir-496, mir-496}, CD63 (CD63 molecule) [NCBI Gene 967] {aka AD1, HOP-26, ME491, MLA1, OMA81H, Pltgp40}, MIR935 (microRNA 935) [NCBI Gene 100126325] {aka MIRN935, hsa-mir-935, mir-935}, MIR300 (microRNA 300) [NCBI Gene 100126297] {aka MIRN300, hsa-mir-300}, MIR26B (microRNA 26b) [NCBI Gene 407017] {aka MIRN26B, hsa-mir-26b, miR-26b}, NOTCH1 (notch receptor 1) [NCBI Gene 4851] {aka AOS5, AOVD1, TAN1, hN1}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}, HMGA2 (high mobility group AT-hook 2) [NCBI Gene 8091] {aka BABL, HMGI-C, HMGIC, LIPO, SRS5, STQTL9}, CDH1 (cadherin 1) [NCBI Gene 999] {aka Arc-1, BCDS1, CD324, CDHE, ECAD, LCAM}, MIR34A (microRNA 34a) [NCBI Gene 407040] {aka MIRN34A, miRNA34A, mir-34, mir-34a}, PTK2 (protein tyrosine kinase 2) [NCBI Gene 5747] {aka FADK, FADK 1, FAK, FAK1, FRNK, PPP1R71}, CCL2 (C-C motif chemokine ligand 2) [NCBI Gene 6347] {aka GDCF-2, HC11, HSMCR30, MCAF, MCP-1, MCP1}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, MIR30A (microRNA 30a) [NCBI Gene 407029] {aka MIRN30A, mir-30a}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, PDCD6IP (programmed cell death 6 interacting protein) [NCBI Gene 10015] {aka AIP1, ALIX, DRIP4, HP95, MCPH29}
- **Diseases:** TNBC (MESH:D064726), metastasis (MESH:D009362), injury to (MESH:D014947), neurodegeneration (MESH:D019636), colorectal/prostate cancer (MESH:D015179), tumorigenic (MESH:D002471), Tumor (MESH:D009369), micrometastasis (MESH:D061206), Chronic inflammation (MESH:D007249), SMR-WT (MESH:D012019), BC (MESH:D001943)
- **Chemicals:** chloroform (MESH:D002725), ethanol (MESH:D000431), Cholesterol (MESH:D002784), Caspase-Glo 1 (-), streptomycin (MESH:D013307), lipid (MESH:D008055), YVAD CHO (MESH:C118632), sphingomyelin (MESH:D013109), phenol (MESH:D019800), PBS (MESH:D007854), penicillin (MESH:D010406), CHO (MESH:C034482), CO2 (MESH:D002245)
- **Species:** Bos taurus (bovine, species) [taxon 9913], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** MCF10A — Homo sapiens (Human), Spontaneously immortalized cell line (CVCL_0598), 231 — Mus musculus (Mouse), Hybridoma (CVCL_L524), CHO — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_0213), MDA MB 231 — Homo sapiens (Human), Breast adenocarcinoma, Cancer cell line (CVCL_0062)

## Figures

10 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13025785/full.md

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Source: https://tomesphere.com/paper/PMC13025785