# Cyclophilin D, Regulator of Mitochondrial Permeability Transition and Bioenergetics, Promotes Adipogenic Differentiation of Mesenchymal Stem Cells

**Authors:** Chen Yu, Sarah E. Catheline, Roman A. Eliseev

PMC · DOI: 10.3390/cells15060509 · 2026-03-13

## TL;DR

This study shows that Cyclophilin D (CypD) influences the fat-forming ability of bone marrow stem cells, impacting bone loss and fat accumulation during aging.

## Contribution

The study reveals a novel role of CypD in regulating mitochondrial metabolism and adipogenesis in mesenchymal stem cells.

## Key findings

- CypD loss-of-function impairs BMSC adipogenesis, while gain-of-function enhances it.
- CypD regulates metabolic reprogramming during adipogenesis, affecting glycolysis and OXPHOS.
- CypD's role is linked to age-related bone loss and marrow fat accumulation.

## Abstract

During aging, bone marrow stromal (a.k.a. mesenchymal stem) cells (BMSCs) shift their lineage commitment away from osteogenesis and towards adipogenesis, resulting in bone loss and marrow fat accumulation. We previously reported that during osteogenesis, BMSCs activate mitochondrial oxidative phosphorylation (OXPHOS) at least in part by downregulating cyclophilin D (CypD) expression and, consequently, mitochondrial permeability transition pore (MPTP) activity. We also reported that in contrast, during adipogenesis, BMSCs upregulate CypD and MPTP, activate glycolysis and inhibit OXPHOS. To further study the role of CypD in BMSC bioenergetics, adipogenesis and bone marrow fat accumulation, we used CypD loss-of-function (LOF) or gain-of-function (GOF) models in osteo-adipoprogenitors in vitro and in vivo. We found that CypD LOF and GOF are associated with impaired and enhanced BMSC adipogenesis, respectively, both in vitro and in ectopic bone grafts in vivo. In addition, bioenergetic profiling and metabolomic analyses show evidence of corresponding metabolic reprogramming in CypD LOF and GOF cells. In summary, our study demonstrates the role of CypD-regulated mitochondrial metabolism during BMSC adipogenesis, facilitating the understanding of stem cell fate determination and the molecular mechanism of age-related bone loss as well as bone marrow fat accumulation.

## Linked entities

- **Genes:** PPID (peptidylprolyl isomerase D) [NCBI Gene 5481]

## Full-text entities

- **Genes:** Lep (leptin) [NCBI Gene 16846] {aka ob, obese}, Pparg (peroxisome proliferator activated receptor gamma) [NCBI Gene 19016] {aka Nr1c3, PPAR-gamma, PPAR-gamma2, PPARgamma, PPARgamma2}, Cebpa (CCAAT/enhancer binding protein alpha) [NCBI Gene 12606] {aka C/ebpalpha, CBF-A, Cebp}, Trp53-ps (transformation related protein 53, pseudogene) [NCBI Gene 22060], Bmp2 (bone morphogenetic protein 2) [NCBI Gene 12156] {aka Bmp2a}, Pecam1 (platelet/endothelial cell adhesion molecule 1) [NCBI Gene 18613] {aka Cd31, PECAM-1, Pecam}, Gh (growth hormone) [NCBI Gene 14599] {aka Gh1, Ghb1}, Myc (Myc proto-oncogene, bHLH transcription factor) [NCBI Gene 17869] {aka Myc2, Niard, Nird, bHLHe39}, Ptprc (protein tyrosine phosphatase receptor type C) [NCBI Gene 19264] {aka B220, CD45R, Cd45, L-CA, Ly-5, Lyt-4}, Ptpn2 (protein tyrosine phosphatase, non-receptor type 2) [NCBI Gene 19255] {aka Ptpt, TC-PTP}, Runx2 (runt related transcription factor 2) [NCBI Gene 12393] {aka AML3, CBF-alpha-1, Cbf, Cbfa-1, Cbfa1, LS3}, PPID (peptidylprolyl isomerase D) [NCBI Gene 5481] {aka CYP-40, CYPD}, Prrx1 (paired related homeobox 1) [NCBI Gene 18933] {aka A230024N07Rik, K-2, MHox1, Pmx, Pmx1, Prx1}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, B2m (beta-2 microglobulin) [NCBI Gene 12010] {aka Ly-m11, beta2-m, beta2m}, Plin1 (perilipin 1) [NCBI Gene 103968] {aka 6030432J05Rik, Peri, Plin}, Bcl2 (B cell leukemia/lymphoma 2) [NCBI Gene 12043] {aka Bcl-2, C430015F12Rik, D630044D05Rik, D830018M01Rik}, Sirt3 (sirtuin 3) [NCBI Gene 64384] {aka 2310003L23Rik, Sir2l3}, Ppif (peptidylprolyl isomerase F (cyclophilin F)) [NCBI Gene 105675] {aka CyP-D, CyP-F, CypD, PPIase}, Nfkb1 (nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105) [NCBI Gene 18033] {aka NF-KB1, NF-kappaB, NF-kappaB1, p105, p50, p50/p105}, Adipoq (adiponectin, C1Q and collagen domain containing) [NCBI Gene 11450] {aka 30kDa, APN, Acdc, Acrp30, Ad, Adid}
- **Diseases:** estrogen (MESH:D056828), osteoporosis (MESH:D010024), bone fracture (MESH:D050723), adiposity (MESH:D018205), injury to (MESH:D014947), ectopic bone formation (MESH:D000072717), CRC (MESH:D016055), obesity (MESH:D009765), Bone (MESH:D001847), mitochondrial dysfunction (MESH:D028361)
- **Chemicals:** succinate (MESH:D019802), GSSG (MESH:D019803), formalin (MESH:D005557), FCCP (MESH:D002259), Isoflurane (MESH:D007530), Acetoacetate (MESH:C016635), NAD+ (MESH:D009243), ROS (MESH:D017382), penicillin (MESH:D010406), H&amp;E (MESH:D006371), isocitrate (MESH:C034219), methanol (MESH:D000432), L-acetylcarnitine (MESH:D000108), GSH (MESH:D005978), rosiglitazone (MESH:D000077154), L-Cysteine (MESH:D003545), alcian blue (MESH:D000423), PBS (MESH:D007854), IBMX (MESH:D015056), amino acids (MESH:D000596), glucose-6-phosphate (MESH:D019298), pyruvate (MESH:D019289), acetyl-CoA (MESH:D000105), digitonin (MESH:D004072), Tween 20 (MESH:D011136), CO2 (MESH:D002245), ATP (MESH:D000255), Taurine (MESH:D013654), CsA (MESH:D016572), antimycin A (MESH:D000968), Osmium Tetroxide (MESH:D009993), Trypan Blue (MESH:D014343), water (MESH:D014867), Hoechst 33342 (MESH:C017807), L-tyrosine (MESH:D014443), D-glucose (MESH:D005947), nitrogen (MESH:D009584), puromycin (MESH:D011691), citrate (MESH:D019343), PVDF (MESH:C024865), Calcium (MESH:D002118), 2-deoxyglucose (MESH:D003847), streptomycin (MESH:D013307), Ca2+ (-), O2 (MESH:D010100), L-threonine (MESH:D013912), lactate (MESH:D019344), fatty acid (MESH:D005227), 2-HG (MESH:C019417), fructose-6-phosphate (MESH:C027618), SYBR Green (MESH:C098022), L-glutamine (MESH:D005973), acid (MESH:D000143), sodium citrate (MESH:D000077559), SDS (MESH:D012967), DAPI (MESH:C007293), Nile Red (MESH:C044808), NIM811 (MESH:C090438), EDTA (MESH:D004492), dexamethasone (MESH:D003907)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** K166Q, K166
- **Cell lines:** C3H10t1/2 — Mus musculus (Mouse), Mouse cerebellar neoplasm, Cancer cell line (CVCL_C6GE), /6J — Homo sapiens (Human), Cutaneous melanoma, Cancer cell line (CVCL_W797), C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU), C57BL/6J — Mus musculus (Mouse), Transformed cell line (CVCL_C0MW), LOF — Bos taurus (Bovine), Spontaneously immortalized cell line (CVCL_1E25), C3H10T1/2 — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0190)

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13025710/full.md

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Source: https://tomesphere.com/paper/PMC13025710