# Integrated Functional and scRNA-Seq Analyses Reveal Convergence of M-CSF– and GM-CSF–Derived Macrophages Following IL-27 Polarization

**Authors:** Tomozumi Imamichi, Jun Yang, Qian Chen, Udeshika Kariyawasam, Mayra Marquez, Jeanette Higgins, Jordan Metz, Homa Nath Sharma, Michael W. Baseler, Hongyan Sui

PMC · DOI: 10.3390/cells15060528 · 2026-03-16

## TL;DR

This study shows that IL-27 can reprogram two types of macrophages into a similar state, suggesting a key role for IL-27 in macrophage plasticity.

## Contribution

The study reveals that IL-27 induces a convergent phenotype in M-CSF- and GM-CSF-derived macrophages.

## Key findings

- IL-27-polarized M-Mac and GM-Mac show similar transcriptional and functional profiles.
- IL-27 treatment suppresses HIV replication and enhances CD38 expression and autophagy in macrophages.
- Phagocytic activity is reduced in IL-27-polarized macrophages compared to controls.

## Abstract

What are the main findings?
Two distinct macrophage subsets—M-CSF– and GM-CSF–differentiated monocyte-derived macrophages (MDMs)—are reprogrammed by IL-27 into a convergent phenotype

Two distinct macrophage subsets—M-CSF– and GM-CSF–differentiated monocyte-derived macrophages (MDMs)—are reprogrammed by IL-27 into a convergent phenotype

What are the implications of the main findings?
IL-27 functions as a convergent polarization cytokine.IL-27 may play a central role in regulating macrophage plasticity.

IL-27 functions as a convergent polarization cytokine.

IL-27 may play a central role in regulating macrophage plasticity.

Macrophages differentiated with macrophage colony-stimulating factor (M-CSF) (M-Mac) are widely used as an experimental model. Interleukin 27 (IL-27)-polarized M-Mac (27M-Mac) suppresses HIV replication; however, the effects of IL-27 polarization on granulocyte-macrophage colony-stimulating factor (GM-CSF)-induced macrophages (GM-Mac) remain less investigation. Here, we compare multiple functional properties and gene expression profiles of 27M-Mac and IL-27-polarized GM-Mac (27GM-Mac). M-Mac and GM-Mac were generated from monocytes of healthy donors and subsequently treated with IL-27 for three days. HIV replication in 27M-Mac, GM-Mac, and 27GM-Mac was suppressed to nearly 10% of that in M-Mac; however, single-cell RNA sequencing showed that M-Mac clustered with GM-Mac, and 27M-Mac clustered with 27GM-Mac. Expression of CD38 and secretion of CXCL9 and C1q were significantly increased in 27M-Mac and 27GM-Mac compared with M-Mac and GM-Mac. Although CD16 and CD64 expression increased in 27M-Mac and 27GM-Mac relative to their respective controls, phagocytic activity in 27M-Mac and 27GM-Mac was 30% of that in M-Mac. Autophagy was promoted 3.7-fold more strongly in 27M-Mac than in M-Mac, reaching levels comparable to those in GM-Mac and 27GM-Mac. Collectively, these findings indicate that IL-27 polarizes M-Mac and GM-Mac toward transcriptionally and functionally similar subtypes, providing insight into the role of IL-27 in macrophage polarization and plasticity.

## Linked entities

- **Proteins:** IL27 (interleukin 27), CD38 (CD38 molecule), CXCL9 (C-X-C motif chemokine ligand 9), C1qa (complement component 1, q subcomponent, alpha polypeptide), FCGR3B (Fc gamma receptor IIIb), FCGR1A (Fc gamma receptor Ia)

## Full-text entities

- **Genes:** IFNB1 (interferon beta 1) [NCBI Gene 3456] {aka IFB, IFF, IFN-beta, IFNB}, C1qa (complement component 1, q subcomponent, alpha polypeptide) [NCBI Gene 12259] {aka Adic, C1q}, Csf1 (colony stimulating factor 1 (macrophage)) [NCBI Gene 12977] {aka BAP025, Csfm, MCSF, Mhdabap25, PG-M-CSF, op}, MAP1LC3A (microtubule associated protein 1 light chain 3 alpha) [NCBI Gene 84557] {aka ATG8E, LC3, LC3A, MAP1ALC3, MAP1BLC3}, NRSN1 (neurensin 1) [NCBI Gene 140767] {aka VMP, p24}, SLC7A11 (solute carrier family 7 member 11) [NCBI Gene 23657] {aka CCBR1, xCT}, Cd38 (CD38 antigen) [NCBI Gene 12494] {aka ADPRC 1, Cd38-rs1, I-19}, NFE2L3 (NFE2 like bZIP transcription factor 3) [NCBI Gene 9603] {aka NRF3}, FCGR3A (Fc gamma receptor IIIa) [NCBI Gene 2214] {aka CD16-II, CD16A, FCG3, FCGR3, FCRIIIA, FcGRIIIA}, STAT3 (signal transducer and activator of transcription 3) [NCBI Gene 6774] {aka ADMIO, ADMIO1, APRF, HIES}, CDK1 (cyclin dependent kinase 1) [NCBI Gene 983] {aka CDC2, CDC28A, P34CDC2}, CSF2 (colony stimulating factor 2) [NCBI Gene 1437] {aka CSF, GMCSF}, EXOC3L1 (exocyst complex component 3 like 1) [NCBI Gene 283849] {aka EXOC3L}, IL27 (interleukin 27) [NCBI Gene 246778] {aka IL-27, IL-27A, IL27A, IL27p28, IL30, p28}, C1QA (complement C1q A chain) [NCBI Gene 712] {aka C1QD1}, CXCL9 (C-X-C motif chemokine ligand 9) [NCBI Gene 4283] {aka CMK, Humig, MIG, SCYB9, crg-10}, SLC1A2 (solute carrier family 1 member 2) [NCBI Gene 6506] {aka DEE41, EAAT2, EIEE41, GLT-1, GLT1, HBGT}, CSF1 (colony stimulating factor 1) [NCBI Gene 1435] {aka CSF-1, MCSF, PG-M-CSF}, Il6st (interleukin 6 signal transducer) [NCBI Gene 16195] {aka 5133400A03Rik, CD130, D13Ertd699e, gp130}, STAT1 (signal transducer and activator of transcription 1) [NCBI Gene 6772] {aka CANDF7, IMD31A, IMD31B, IMD31C, ISGF-3, STAT91}, SESN3 (sestrin 3) [NCBI Gene 143686] {aka SEST3}, CD38 (CD38 molecule) [NCBI Gene 952] {aka ADPRC 1, ADPRC1, cADPR1}, Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}, Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, SOD2 (superoxide dismutase 2) [NCBI Gene 6648] {aka GC1, GClnc1, IPO-B, IPOB, MNSOD, MVCD6}, BMAL2 (basic helix-loop-helix ARNT like 2) [NCBI Gene 56938] {aka ARNTL2, CLIF, MOP9, PASD9, bHLHe6}, Il27 (interleukin 27) [NCBI Gene 246779] {aka IL-27, IL-27-A, IL-27p28, IL27-A, Il30, p28}, FCGR1A (Fc gamma receptor Ia) [NCBI Gene 2209] {aka CD64, CD64A, FCG1, FCGR1, FCRI, FcgammaRI}, Csf2 (colony stimulating factor 2 (granulocyte-macrophage)) [NCBI Gene 12981] {aka CSF, Csfgm, GMCSF, Gm-CSf, MGI-IGM}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, IFNA1 (interferon alpha 1) [NCBI Gene 3439] {aka IFL, IFN, IFN-ALPHA, IFN-alphaD, IFNA13, IFNA@}, MX1 (MX dynamin like GTPase 1) [NCBI Gene 4599] {aka IFI-78K, IFI78, MX, MxA, lncMX1-215}
- **Diseases:** cytomegalovirus (MESH:D003586), cervical cancer (MESH:D002583), M1 (MESH:D015470), 27GM-Mac (MESH:C562602), infection (MESH:D007239), injury to (MESH:D014947), HIV (MESH:D015658), SARS-CoV-2 infection (MESH:D000086382), inflammatory (MESH:D007249), M (MESH:C566367), Infectious Diseases (MESH:D003141), Cancer (MESH:D009369), M-Mac (MESH:D055501), viral infections (MESH:D014777)
- **Chemicals:** EDTA (MESH:D004492), zinc (MESH:D015032), HEPES (MESH:D006531), PMA (MESH:D013755), SDS (MESH:D012967), adenosine (MESH:D000241), cytochalasin D (MESH:D015638), Amplex Red (MESH:C470430), NO (MESH:D009569), AOPI (-), gentamicin (MESH:D005839), trypan blue (MESH:D014343), Hoechst 33342 (MESH:C017807), Bis-Tris (MESH:C026272), copper (MESH:D003300), CQ (MESH:D002738), DPBS (MESH:C012939), CO2 (MESH:D002245), MOPS (MESH:C008550), LPS (MESH:D008070), Hydrogen Peroxide (MESH:D006861), PBS (MESH:D007854), PHrodo Red (MESH:C000622037), NaN3 (MESH:D019810), ROS (MESH:D017382)
- **Species:** Chikungunya virus (no rank) [taxon 37124], Homo sapiens (human, species) [taxon 9606], Human immunodeficiency virus 1 (no rank) [taxon 11676], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049], Coxsackievirus B3 (no rank) [taxon 12072], Mus musculus (house mouse, species) [taxon 10090], Dengue virus (no rank) [taxon 12637], Respiratory syncytial virus (no rank) [taxon 12814], Cytomegalovirus (genus) [taxon 10358], hepatitis C virus [taxon 11103], Hepatitis B virus (no rank) [taxon 10407], Zika virus (no rank) [taxon 64320], Escherichia coli (E. coli, species) [taxon 562], Mayaro virus (no rank) [taxon 59301]
- **Cell lines:** M — Homo sapiens (Human), Prostate carcinoma, Cancer cell line (CVCL_M133), 27GM — Mus musculus (Mouse), Hybridoma (CVCL_C5HZ), STBL3 — Mus musculus (Mouse), Hybridoma (CVCL_C6V6), HEK293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), AB-Mac — Labeo rohita (Indian major carp), Spontaneously immortalized cell line (CVCL_A8VR), 27M — Homo sapiens (Human), Invasive breast carcinoma of no special type, Cancer cell line (CVCL_UU89), 27GM.RAGs — Homo sapiens (Human), Pyothorax-associated lymphoma, Cancer cell line (CVCL_X749), K-12 — Felis catus (Cat), Feline mammary carcinoma, Cancer cell line (CVCL_IX41), -Mac — Homo sapiens (Human), Primary cutaneous T-cell non-Hodgkin lymphoma, Cancer cell line (CVCL_H631), Com.27GM.DEGs — Homo sapiens (Human), Transformed cell line (CVCL_5552)

## Figures

18 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13025208/full.md

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Source: https://tomesphere.com/paper/PMC13025208