# MicroRNA Regulation in Kidney Interstitial Fibrosis

**Authors:** Hirofumi Sakuma, Satoshi Kawaguchi, Yuya Kobayashi, Akiko Koizumi, Naoki Nakagawa

PMC · DOI: 10.3390/epigenomes10010021 · 2026-03-16

## TL;DR

This review explores how microRNAs regulate kidney fibrosis and their potential as biomarkers and therapies for chronic kidney disease.

## Contribution

The paper integrates miRNA functions in fibrotic pathways and disease-specific roles in chronic kidney disease.

## Key findings

- miRNAs regulate fibrotic pathways through multiple cell types in kidney disease.
- Disease-specific miRNA dysregulation is observed in diabetic kidney disease and other CKD types.
- miRNAs show promise as biomarkers and therapeutic targets for CKD.

## Abstract

MicroRNAs (miRNAs) are small non-coding RNAs that play central roles in post-transcriptional gene regulation and cellular homeostasis maintenance. Dysregulation of miRNA expression is increasingly recognized as a key contributor to tissue injury during the acute phase and to disease progression in the chronic phase. Chronic kidney disease (CKD) commonly progresses and ultimately leads to kidney failure through interstitial fibrosis, which is the final common pathway of CKD progression. Interstitial fibrosis is driven not only by fibroblast activation but also by phenotypic transitions in injured tubular epithelial cells, infiltrating macrophages, and peritubular capillary cells. These multifaceted cellular pathways induce and exacerbate interstitial fibrosis, and several miRNAs have been identified as important regulators of these pathways. In addition to fibrotic pathophysiological features, disease-specific dysregulation of miRNAs has been increasingly detected in various causes of CKD, including diabetic kidney disease, chronic glomerulonephritis, and nephrosclerosis. In this review, we provide an integrated overview of miRNA-mediated regulation in CKD, with particular emphasis on cell lineage functions within fibrotic pathways and disease-specific roles. Finally, we discuss the emerging potential of miRNAs as biomarkers and therapeutic targets for CKD and highlight future research directions.

## Linked entities

- **Diseases:** chronic kidney disease (MONDO:0005300), diabetic kidney disease (MONDO:0005016), nephrosclerosis (MONDO:0006044)

## Full-text entities

- **Genes:** MMP9 (matrix metallopeptidase 9) [NCBI Gene 4318] {aka CLG4B, GELB, MANDP2, MMP-9}, Lin28a (lin-28 homolog A) [NCBI Gene 83557] {aka Gm10299, Lin-28, Lin28, Tex17, lin-28A}, MIR141 (microRNA 141) [NCBI Gene 406933] {aka MIRN141, mir-141}, SMAD3 (SMAD family member 3) [NCBI Gene 4088] {aka HSPC193, HsT17436, JV15-2, LDS1C, LDS3, MADH3}, CISH (cytokine inducible SH2 containing protein) [NCBI Gene 1154] {aka BACTS2, CIS, CIS-1, G18, SOCS}, SMURF2 (SMAD specific E3 ubiquitin protein ligase 2) [NCBI Gene 64750], SLC5A2 (solute carrier family 5 member 2) [NCBI Gene 6524] {aka SGLT2}, MIR150 (microRNA 150) [NCBI Gene 406942] {aka MIRN150, miRNA150, mir-150}, Mir382 (microRNA 382) [NCBI Gene 723912] {aka Mirn382, mir-382, mmu-mir-382}, MIR214 (microRNA 214) [NCBI Gene 406996] {aka MIRN214, miRNA214, mir-214}, CD68 (CD68 molecule) [NCBI Gene 968] {aka GP110, LAMP4, SCARD1}, SIRT6 (sirtuin 6) [NCBI Gene 51548] {aka SIR2L6, hSIRT6}, Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, FGF2 (fibroblast growth factor 2) [NCBI Gene 2247] {aka BFGF, FGF-2, FGFB, HBGF-2}, Mir21a (microRNA 21a) [NCBI Gene 387140] {aka Mir21, Mirn21, mmu-mir-21, mmu-mir-21a}, Acta2 (actin alpha 2, smooth muscle, aorta) [NCBI Gene 11475] {aka 0610041G09Rik, Actvs, SMAalpha, SMalphaA, a-SMA, alphaSMA}, Tgfb1 (transforming growth factor, beta 1) [NCBI Gene 21803] {aka TGF-beta1, TGFbeta1, Tgfb, Tgfb-1}, Stat3 (signal transducer and activator of transcription 3) [NCBI Gene 20848] {aka 1110034C02Rik, Aprf}, CD79A (CD79a molecule) [NCBI Gene 973] {aka IGA, IGAlpha, MB-1, MB1}, Pdgfrb (platelet derived growth factor receptor, beta polypeptide) [NCBI Gene 18596] {aka CD140b, PDGFR-1, Pdgfr}, NFE2L2 (NFE2 like bZIP transcription factor 2) [NCBI Gene 4780] {aka IMDDHH, NRF2, Nrf-2}, COL1A2 (collagen type I alpha 2 chain) [NCBI Gene 1278] {aka EDSARTH2, EDSCV, OI4}, SKIL (SKI like proto-oncogene) [NCBI Gene 6498] {aka SNO, SnoA, SnoI, SnoN}, SFRP1 (secreted frizzled related protein 1) [NCBI Gene 6422] {aka FRP, FRP-1, FRP1, FrzA, SARP2}, GAB1 (GRB2 associated binding protein 1) [NCBI Gene 2549] {aka DFNB26}, TSPAN8 (tetraspanin 8) [NCBI Gene 7103] {aka CO-029, TM4SF3}, EGR1 (early growth response 1) [NCBI Gene 1958] {aka AT225, G0S30, KROX-24, NGFI-A, TIS8, ZIF-268}, COL1A1 (collagen type I alpha 1 chain) [NCBI Gene 1277] {aka CAFYD, EDSARTH1, EDSC, OI1, OI2, OI3}, ACTA2 (actin alpha 2, smooth muscle) [NCBI Gene 59] {aka ACTSA, SMDYS}, SPRY1 (sprouty RTK signaling antagonist 1) [NCBI Gene 10252] {aka hSPRY1}, NR3C2 (nuclear receptor subfamily 3 group C member 2) [NCBI Gene 4306] {aka MCR, MLR, MR, NR3C2VIT}, STAT1 (signal transducer and activator of transcription 1) [NCBI Gene 6772] {aka CANDF7, IMD31A, IMD31B, IMD31C, ISGF-3, STAT91}, MIR205 (microRNA 205) [NCBI Gene 406988] {aka MIRN205, mir-205}, HIF1AN (hypoxia inducible factor 1 subunit alpha inhibitor) [NCBI Gene 55662] {aka FIH1}, MIR29B1 (microRNA 29b-1) [NCBI Gene 407024] {aka MIRN29B1, miR-29b, miRNA29B1, mir-29b-1}, VEGFA (vascular endothelial growth factor A) [NCBI Gene 7422] {aka L-VEGF, MVCD1, VEGF, VPF}, ZEB1 (zinc finger E-box binding homeobox 1) [NCBI Gene 6935] {aka AREB6, BZP, DELTAEF1, FECD6, NIL2A, PPCD3}, SP1 (Sp1 transcription factor) [NCBI Gene 6667], SMAD7 (SMAD family member 7) [NCBI Gene 4092] {aka CRCS3, MADH7, MADH8}, LIN28A (lin-28 RNA binding posttranscriptional regulator A) [NCBI Gene 79727] {aka CSDD1, LIN-28, LIN28, ZCCHC1, lin-28A}, BDNF (brain derived neurotrophic factor) [NCBI Gene 627] {aka ANON2, BULN2}, DUSP6 (dual specificity phosphatase 6) [NCBI Gene 1848] {aka HH19, MKP3, PYST1}, Nos2 (nitric oxide synthase 2, inducible) [NCBI Gene 18126] {aka MAC-NOS, NOS-II, Nos-2, Nos2a, i-NOS, iNOS}, ERBB4 (erb-b2 receptor tyrosine kinase 4) [NCBI Gene 2066] {aka ALS19, HER4, p180erbB4}, PTEN (phosphatase and tensin homolog) [NCBI Gene 5728] {aka 10q23del, BZS, CWS1, DEC, GLM2, MHAM}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, PDCD4 (programmed cell death 4) [NCBI Gene 27250] {aka H731}, PTPN11 (protein tyrosine phosphatase non-receptor type 11) [NCBI Gene 5781] {aka BPTP3, CFC, JMML, METCDS, NS1, PTP-1D}, MIR429 (microRNA 429) [NCBI Gene 554210] {aka MIRN429, hsa-mir-429, mir-429}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}, MIR10B (microRNA 10b) [NCBI Gene 406903] {aka MIRN10B, hsa-mir-10b, miRNA10B, mir-10b}, SOX4 (SRY-box transcription factor 4) [NCBI Gene 6659] {aka CSS10, EVI16, IDDSDF}, MIR200B (microRNA 200b) [NCBI Gene 406984] {aka MIRN200B, mir-200b}, CREBBP (CREB binding lysine acetyltransferase) [NCBI Gene 1387] {aka CBP, KAT3A, MKHK1, RSTS, RSTS1}, PIK3CB (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) [NCBI Gene 5291] {aka P110BETA, PI3K, PI3KBETA, PIK3C1}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, TXN (thioredoxin) [NCBI Gene 7295] {aka TRDX, TRX, TRX1, TXN1, Trx80}, PECAM1 (platelet and endothelial cell adhesion molecule 1) [NCBI Gene 5175] {aka CD31, CD31/EndoCAM, GPIIA', PECA1, PECAM-1, endoCAM}, PPARA (peroxisome proliferator activated receptor alpha) [NCBI Gene 5465] {aka NR1C1, PPAR, PPAR-alpha, PPARalpha, hPPAR}, MIR34A (microRNA 34a) [NCBI Gene 407040] {aka MIRN34A, miRNA34A, mir-34, mir-34a}
- **Diseases:** tissue injury (MESH:D017695), Interstitial Fibrosis (MESH:D005355), DN (MESH:D003928), Alport (MESH:D009394), Hypertensive Nephropathy (MESH:C563161), cancer metastasis (MESH:D009369), hypoxia (MESH:D000860), sepsis (MESH:D018805), proteinuria (MESH:D011507), MMT (MESH:D055501), AKI (MESH:D058186), ischemic (MESH:D002545), interstitial (MESH:D065167), EndMT (MESH:D008579), kidney failure (MESH:D051437), endothelial dysfunction (MESH:D014652), inflammation (MESH:D007249), glomerular and tubular injury (MESH:D015499), albuminuria (MESH:D000419), CKD (MESH:D051436), interstitial nephritis (MESH:D009395), hyperglycemia (MESH:D006943), sclerosis (MESH:D012598), UUO (MESH:D014517), hypertension (MESH:D006973), glomerular hypertrophy (MESH:D006984), nephritis (MESH:D009393), hypertensive kidney disease (MESH:D007674), vascular injury (MESH:D057772), IRI (MESH:D015428), type 1 or type 2 diabetes (MESH:D003924), atrophy (MESH:D001284), injury to (MESH:D014947), tubular injury (MESH:D000230), fibrotic lesions (MESH:D009059), hypertensive nephrosclerosis (MESH:D009400), glomerulonephritis (MESH:D005921), ESKD (MESH:D007676), microvascular damage (MESH:D017566), diabetes (MESH:D003920), ischemia-reperfusion injury (MESH:D015427), mitochondrial dysfunction (MESH:D028361), Hyperglycemic (MESH:D006944), ADPKD (MESH:D016891), cardiovascular complications (MESH:D002318), IgA Nephropathy (MESH:D005922), kidney function loss (MESH:D007680), nephron loss (MESH:D007683)
- **Chemicals:** advanced glycation end products (MESH:D017127), 3-NT (MESH:C002744), ROS (MESH:D017382), FA (MESH:D005492), AA (MESH:C000228), GW4869 (MESH:C468773), phosphate (MESH:D010710), creatinine (MESH:D003404), glucose (MESH:D005947), Melatonin (MESH:D008550), polyol (MESH:C024617), LPS (MESH:D008070), LNA (MESH:C477371), aldosterone (MESH:D000450), oligonucleotide (MESH:D009841), flavonoids (MESH:D005419), paclitaxel (MESH:D017239), IgANAA (-), STZ (MESH:D013311), lipid (MESH:D008055), DOCA (MESH:D064791)
- **Species:** Rattus norvegicus (brown rat, species) [taxon 10116], Smilax glabra (species) [taxon 703614], Rodentia (rodent, order) [taxon 9989], Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]
- **Cell lines:** RAW264.7 — Mus musculus (Mouse), Mouse leukemia, Cancer cell line (CVCL_0493), NRK- — Rattus norvegicus (Rat), Spontaneously immortalized cell line (CVCL_3758), NRK-52E — Rattus norvegicus (Rat), Spontaneously immortalized cell line (CVCL_0468), vein endothelial cell — Homo sapiens (Human), Finite cell line (CVCL_3722), NRK-49F — Rattus norvegicus (Rat), Spontaneously immortalized cell line (CVCL_2144), rat — Rattus norvegicus (Rat), Spontaneously immortalized cell line (CVCL_0512), HUVEC — Homo sapiens (Human), Finite cell line (CVCL_2959), HMC — Homo sapiens (Human), Mast cell leukemia, Cancer cell line (CVCL_0003), normal — Homo sapiens (Human), Induced pluripotent stem cell (CVCL_UL44), cord — Homo sapiens (Human), Finite cell line (CVCL_B5ZH), TEC — Homo sapiens (Human), Telomerase immortalized cell line (CVCL_WN15)

## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13025061/full.md

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Source: https://tomesphere.com/paper/PMC13025061