# A small-molecule stabilizer of the calpastatin–calpain-2 complex restores mitochondrial function and mitigates neurodegeneration

**Authors:** Di Hu, Xiaoyan Sun, Yutong Shang, Kathleen Lundberg, Drew J. Adams, Xin Qi

PMC · DOI: 10.1126/sciadv.aeb1174 · 2026-03-27

## TL;DR

A new small molecule stabilizes a key protein complex to restore mitochondrial function and reduce neurodegeneration in diseases like Huntington's and tauopathy.

## Contribution

A36 is a brain-penetrant molecule that selectively stabilizes the CAST–calpain-2 complex without inhibiting GSK3, offering a novel therapeutic strategy.

## Key findings

- A36 normalizes mitochondrial function and reduces oxidative stress in patient-derived neurons and mouse models.
- In vivo, A36 reduces neurodegeneration, mutant huntingtin aggregation, and motor deficits in HD mice.
- A36 lowers phosphorylated tau and neuroinflammation in tauopathy mouse models.

## Abstract

Mitochondrial dysfunction and dysregulated proteolysis drive Huntington’s disease (HD), tauopathy, and related neurodegenerative disorders. Calpain-2, a Ca2+-activated protease restrained by calpastatin (CAST), is pathologically overactivated, yet no therapies directly target this axis. We identify A36, a brain-penetrant small molecule derived from CHIR99021 that selectively stabilizes the CAST–calpain-2 complex without inhibiting GSK3. A36 acts as a protein-protein interaction stabilizer, enhancing CAST–calpain-2 binding, preventing CAST degradation, and thereby limiting calpain-2 activation and mitochondrial damage. In patients with HD induced pluripotent stem cell–derived neurons and mutant mouse striatal neurons, A36 normalized mitochondrial morphology and membrane potential, reduced oxidative stress, and improved survival. In vivo, A36 displayed favorable pharmacokinetics and central nervous system exposure; treatment reduced striatal neurodegeneration, mutant huntingtin aggregation, and motor deficits in HD R6/2 mice, and lowered phosphorylated tau, neuroinflammation, and cognitive decline in tauopathy PS19 mice. These findings establish pharmacological stabilization of CAST–calpain-2 as a therapeutic strategy and position A36 as a mechanism-selective modulator with broad neurodegenerative disease potential.

Medicinal chemistry identified a small molecule offering translational potential for neurodegenerative diseases.

## Linked entities

- **Genes:** CAST (calpastatin) [NCBI Gene 831], LOC104934896 (calpain-2 catalytic subunit) [NCBI Gene 104934896], gsk-3 (Glycogen synthase kinase-3) [NCBI Gene 173149], LOC101450258 (uncharacterized LOC101450258) [NCBI Gene 101450258], MAPT (microtubule associated protein tau) [NCBI Gene 4137]
- **Proteins:** cast.L (calpastatin L homeolog), LOC104934896 (calpain-2 catalytic subunit), gsk-3 (Glycogen synthase kinase-3)
- **Chemicals:** A36 (PubChem CID 3028618), CHIR99021 (PubChem CID 9956119)
- **Diseases:** Huntington’s disease (MONDO:0007739), tauopathy (MONDO:0005574)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Rbfox3 (RNA binding protein, fox-1 homolog (C. elegans) 3) [NCBI Gene 52897] {aka Fox-3, Hrnbp3, NeuN, Neuna60}, EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, Cast (calpastatin) [NCBI Gene 12380], Cdk5 (cyclin dependent kinase 5) [NCBI Gene 12568] {aka Crk6}, Capn12 (calpain 12) [NCBI Gene 60594] {aka CANP 12}, Tardbp (TAR DNA binding protein) [NCBI Gene 230908] {aka 1190002A23Rik, TDP-43, Tdp43}, BDNF (brain derived neurotrophic factor) [NCBI Gene 627] {aka ANON2, BULN2}, HTT (huntingtin) [NCBI Gene 3064] {aka HD, IT15, LOMARS}, Dlg4 (discs large MAGUK scaffold protein 4) [NCBI Gene 13385] {aka Dlgh4, PSD-95, PSD95, SAP90, SAP90A}, Capn1 (calpain 1) [NCBI Gene 12333] {aka Capa-1, Capa1, mu-calpin}, Sod1 (superoxide dismutase 1, soluble) [NCBI Gene 20655] {aka B430204E11Rik, Cu/Zn-SOD, CuZnSOD, Ipo-1, Ipo1, SODC}, Cdk5r1 (cyclin dependent kinase 5, regulatory subunit 1) [NCBI Gene 12569] {aka Cdk5r, D11Bwg0379e, p25, p35}, Nefm (neurofilament, medium polypeptide) [NCBI Gene 18040] {aka NF-M, NF160, NF165, Nef3, Nfm}, DKK1 (dickkopf Wnt signaling pathway inhibitor 1) [NCBI Gene 22943] {aka DKK-1, SK}, Htt (huntingtin) [NCBI Gene 15194] {aka C430023I11Rik, Hd, Hdh, IT15}, Bdnf (brain derived neurotrophic factor) [NCBI Gene 12064], Map2 (microtubule-associated protein 2) [NCBI Gene 17756] {aka G1-397-34, MAP-2, Mtap-2, Mtap2, repro4}, Prnp (prion protein) [NCBI Gene 19122] {aka CD230, PrP, PrP<C>, PrPC, PrPSc, Prn-i}, DLG4 (discs large MAGUK scaffold protein 4) [NCBI Gene 1742] {aka MRD62, PSD95, SAP-90, SAP90}, Snap25 (synaptosomal-associated protein 25) [NCBI Gene 20614] {aka Bdr, GENA70, SNAP-25, SUP, sp}, Dapk2 (death-associated protein kinase 2) [NCBI Gene 13143], CAST (calpastatin) [NCBI Gene 831] {aka BS-17, MIR583HG, PLACK}, Actb (actin, beta) [NCBI Gene 11461] {aka Actx, E430023M04Rik, beta-actin}, MAP2 (microtubule associated protein 2) [NCBI Gene 4133] {aka MAP-2, MAP2A, MAP2B, MAP2C}, Mbp (myelin basic protein) [NCBI Gene 17196] {aka Hmbpr, golli-mbp, jve, mld, shi}, CAPN2 (calpain 2) [NCBI Gene 824] {aka CANP2, CANPL2, CANPml, mCANP}, Ppp1r1b (protein phosphatase 1, regulatory inhibitor subunit 1B) [NCBI Gene 19049] {aka DARPP-32, Darpp32}, Abcb1b (ATP-binding cassette, sub-family B member 1B) [NCBI Gene 18669] {aka Abcb1, Mdr1, Mdr1b, Pgy-1, Pgy1, mdr}, Gfap (glial fibrillary acidic protein) [NCBI Gene 14580], Iba1 (induction of brown adipocytes 1) [NCBI Gene 114737], Nefl (neurofilament, light polypeptide) [NCBI Gene 18039] {aka CMT2E, NF-L, NF68, Nfl}, Dnm1l (dynamin 1-like) [NCBI Gene 74006] {aka 6330417M19Rik, Dlp1, Dnmlp1, Drp1, python}, Atp1b1 (ATPase, Na+/K+ transporting, beta 1 polypeptide) [NCBI Gene 11931] {aka Atp4b, Atpb, Atpb-1, NKbeta1}, Olig2 (oligodendrocyte transcription factor 2) [NCBI Gene 50913] {aka Bhlhb1, Olg-2, Oligo2, RK17, bHLHe19}, Gsk3b (glycogen synthase kinase 3 beta) [NCBI Gene 56637] {aka 7330414F15Rik, 8430431H08Rik, GSK-3, GSK-3beta, GSK3}, SHH (sonic hedgehog signaling molecule) [NCBI Gene 6469] {aka HHG1, HLP3, HPE3, MCOPCB5, SMMCI, ShhNC}, Snca (synuclein, alpha) [NCBI Gene 20617] {aka NACP, alpha-Syn, alphaSYN}, Rb1cc1 (RB1-inducible coiled-coil 1) [NCBI Gene 12421] {aka 2900055E04Rik, 5930404L04Rik, Cc1, FIP200, LaXp180}, PPP1R1B (protein phosphatase 1 regulatory inhibitor subunit 1B) [NCBI Gene 84152] {aka DARPP-32, DARPP32}, Capn2 (calpain 2) [NCBI Gene 12334] {aka CALP80, Capa-2, Capa2, m-calpain, m-calpin}, Eea1 (early endosome antigen 1) [NCBI Gene 216238] {aka A430109M19Rik, B230358H09Rik, ZFYVE2}, DAPK2 (death associated protein kinase 2) [NCBI Gene 23604] {aka DRP-1, DRP1}, Tomm20 (translocase of outer mitochondrial membrane 20) [NCBI Gene 67952] {aka 1810060K07Rik, Gm19268, MAS20, MOM19, TOM20, mKIAA0016}
- **Diseases:** AD (MESH:D000544), deficits (MESH:D009461), calcium dysregulation (MESH:D002128), bioenergetic failure (MESH:D051437), ALS (MESH:D000690), neuronal damage (MESH:D009410), metabolic (MESH:D008659), mitochondrial fragmentation (MESH:D012892), behavioral deficits (MESH:D019958), astrogliosis (MESH:D005911), brain atrophy (MESH:C566985), cognitive decline (MESH:D003072), PD (MESH:D010300), neuroinflammation (MESH:D000090862), toxicity (MESH:D064420), pain (MESH:D010146), striatal degeneration (MESH:C537500), neurodegeneration (MESH:D019636), HD (MESH:D006816), Mitochondrial dysfunction (MESH:D028361), neuropathology (MESH:D009422), tauopathies (MESH:D024801), synaptic degeneration (MESH:D012183), demyelination (MESH:D003711)
- **Chemicals:** ATP (MESH:D000255), ascorbic acid (MESH:D001205), CO2 (MESH:D002245), DPBS (MESH:C012939), Tween 20 (MESH:D011136), iodoacetamide (MESH:D007460), aminopyridine (MESH:D000631), puromycin (MESH:D011691), NaCl (MESH:D012965), glucose (MESH:D005947), N2 (MESH:D009584), urea (MESH:D014508), formic acid (MESH:C030544), polyacrylamide (MESH:C016679), MTT (MESH:C070243), antimycin A (MESH:D000968), dithiothreitol (MESH:D004229), Laemmli buffer (MESH:C088816), water (MESH:D014867), ammonium acetate (MESH:C018824), piperidine (MESH:C032727), ROS (MESH:D017382), 3-[4,5-dimethylthiazol-2-yl]-2,5 diphenyl tetrazolium bromide (MESH:C022616), acetonitrile (MESH:C032159), Y27632 (MESH:C108830), dibutyryl cyclic adenosine monophosphate (MESH:D003994), CHIR99021 (MESH:C473711), neuronal (MESH:C017835), N-methylpiperazine (MESH:C048073), methanol (MESH:D000432), oligomycin A (MESH:C031004), Peptides (MESH:D010455), H2O2 (MESH:D006861), BRIJ-35 (MESH:C515901), penicillin (MESH:D010406), DMSO (MESH:D004121), DAB (MESH:C000469), CCK8 (MESH:D012844), MgCl2 (MESH:D015636), SDS (MESH:D012967), GlutaMAX (MESH:C054122), paraformaldehyde (MESH:C003043), sodium citrate (MESH:D000077559), Hepes (MESH:D006531), MitoSOX Red (MESH:C000597839), rotenone (MESH:D012402), MitoSOX (MESH:C521281), B (MESH:D001895), imidazoles (MESH:D007093), tetramethylrhodamine, methyl ester (MESH:C401833), G418 (MESH:C010680), A29 (MESH:C029665), biotin (MESH:D001710), CaCl2 (MESH:D002122), glycerol (MESH:D005990), EDTA (MESH:D004492), Compound 82 (-), Cd (MESH:D002104), morpholine (MESH:C037574), calcium (MESH:D002118)
- **Species:** Homo sapiens (human, species) [taxon 9606], Drosophila melanogaster (fruit fly, species) [taxon 7227], Mus musculus (house mouse, species) [taxon 10090]
- **Mutations:** P301L, E to G, 150 glutamine (CAG), A/G, A30P, G93A
- **Cell lines:** /2 — Homo sapiens (Human), Colon carcinoma, Cancer cell line (CVCL_A628), A36 — Mus musculus (Mouse), Hybridoma (CVCL_C4Z1), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), HdhQ111 — Bos taurus (Bovine), Hybrid cell line (CVCL_J079), MDCK — Canis lupus familiaris (Dog), Spontaneously immortalized cell line (CVCL_0422), Q111 — Mus musculus (Mouse), Transformed cell line (CVCL_M591), HdhQ7 — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_H340), /6 — Homo sapiens (Human), Tongue squamous cell carcinoma, Cancer cell line (CVCL_5985), R6/2 — Mus musculus (Mouse), Hybridoma (CVCL_9233), Q7 — Mus musculus (Mouse), Transformed cell line (CVCL_M590), PS19 — Mus musculus (Mouse), Hybridoma (CVCL_9225)

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13025052/full.md

---
Source: https://tomesphere.com/paper/PMC13025052