# Circulating MicroRNA Profiling for Phenotypic Stratification in Patients with Metabolic Dysfunction-Associated Fatty Liver Disease: A Candidate-Based Study

**Authors:** Sumbal Nida, Dilshad Ahmed Khan, Muhammad Amjad Pervez, Nayyar Chaudhry, Mohammad Qaiser Alam Khan, Alveena Younas

PMC · DOI: 10.3390/cimb48030272 · 2026-03-04

## TL;DR

This study identifies specific microRNAs in blood that can help distinguish different types of fatty liver disease linked to metabolic issues.

## Contribution

The study introduces a non-invasive miRNA-based method for phenotypic stratification of MAFLD subtypes.

## Key findings

- MAFLD patients showed distinct miRNA expression patterns compared to healthy controls.
- miR-197, miR-99a, and miR-15a showed high diagnostic accuracy for specific MAFLD subtypes.
- Combining miRNA panels with biochemical markers improved diagnostic performance.

## Abstract

Metabolic dysfunction-associated fatty liver disease (MAFLD) comprises phenotypic subgroups, including type-2 diabetes-associated MAFLD (T2D-MAFLD), obesity-associated MAFLD (OB-MAFLD), and lean MAFLD (L-MAFLD). Emerging evidence indicates that dysregulation of miRNAs plays a key role in MAFLD pathogenesis and progression. This study evaluated the diagnostic accuracy of a plasma miRNA-based signature as a non-invasive biomarker for early detection and phenotypic stratification of MAFLD. A total of 393 MAFLD patients and 109 healthy controls were enrolled. Plasma expression of miR-122, miR-103a, miR-222, miR-15a, miR-34a, miR-192, miR-197, and miR-99a was quantified using Reverse transcription polymerase chain reaction. Compared to controls, MAFLD patients exhibited significant upregulation of miR-122, miR-103a, miR-222, miR-15a, and miR-34a, alongside downregulation of miR-197 and miR-99a. Multinomial logistic regression revealed phenotype-specific associations: miR-103a, miR-34a, and miR-197 with T2D-MAFLD; miR-122, miR-222, and miR-99a with OB-MAFLD; and miR-15a with L-MAFLD. Receiver operating characteristic analysis demonstrated highest individual diagnostic accuracy for miR-197 in T2D-MAFLD (AUC = 0.784), miR-99a in OB-MAFLD (AUC = 0.869), and miR-15a in L-MAFLD (AUC = 0.776). Integrating combined miRNA panels with biochemical markers further improved diagnostic performance and clinical utility, achieving high positive and negative predictive values. In conclusion, plasma miRNA signatures enable phenotype-specific discrimination of MAFLD subtypes and may serve as promising non-invasive tools pending multi-center validation.

## Full-text entities

- **Genes:** MIR1973 (microRNA 1973) [NCBI Gene 100302290] {aka hsa-mir-1973, mir-1973}, BTG2 (BTG anti-proliferation factor 2) [NCBI Gene 7832] {aka APRO1, PC3, TIS21}, MIR122 (microRNA 122) [NCBI Gene 406906] {aka MIR122A, MIRN122, MIRN122A, hsa-mir-122, miRNA122, miRNA122A}, MIR99A (microRNA 99a) [NCBI Gene 407055] {aka MIRN99A, mir-99a}, CRP (C-reactive protein) [NCBI Gene 1401] {aka PTX1}, CAV1 (caveolin 1) [NCBI Gene 857] {aka BSCL3, CGL3, LCCNS, MSTP085, PPH3, VIP21}, LEP (leptin) [NCBI Gene 3952] {aka LEPD, OB, OBS}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, ACOX1 (acyl-CoA oxidase 1) [NCBI Gene 51] {aka ACOX, AOX, MITCH, PALMCOX, SCOX}, MIR192 (microRNA 192) [NCBI Gene 406967] {aka MIRN192, miR-192, miRNA192}, ADIPOR1 (adiponectin receptor 1) [NCBI Gene 51094] {aka ACDCR1, CGI-45, CGI45, PAQR1, TESBP1A}, CEL (carboxyl ester lipase) [NCBI Gene 1056] {aka BAL, BSDL, BSSL, CELL, CEase, FAP}, ADIPOQ (adiponectin, C1Q and collagen domain containing) [NCBI Gene 9370] {aka ACDC, ACRP30, ADIPQTL1, ADPN, APM-1, APM1}, ACACA (acetyl-CoA carboxylase alpha) [NCBI Gene 31] {aka ACAC, ACACAD, ACACalpha, ACC, ACC1, ACCA}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, PPARA (peroxisome proliferator activated receptor alpha) [NCBI Gene 5465] {aka NR1C1, PPAR, PPAR-alpha, PPARalpha, hPPAR}, MIR34A (microRNA 34a) [NCBI Gene 407040] {aka MIRN34A, miRNA34A, mir-34, mir-34a}, KRT18 (keratin 18) [NCBI Gene 3875] {aka CK-18, CYK18, K18}, SFRP4 (secreted frizzled related protein 4) [NCBI Gene 6424] {aka FRP-4, FRPHE, FRZB-2, PYL, sFRP-4}, SREBF1 (sterol regulatory element binding transcription factor 1) [NCBI Gene 6720] {aka HMD, IFAP2, SREBP1, bHLHd1}, DICER1 (dicer 1, ribonuclease III) [NCBI Gene 23405] {aka DCR1, Dicer, Dicer1e, GLOW, HERNA, K12H4.8-LIKE}, INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, MIR197 (microRNA 197) [NCBI Gene 406974] {aka MIRN197, miR-197, miRNA197}, MIR15A (microRNA 15a) [NCBI Gene 406948] {aka MIRN15A, hsa-mir-15a, miRNA15A, mir-15a}, GPT (glutamic--pyruvic transaminase) [NCBI Gene 2875] {aka AAT1, ALT, ALT1, GPT1, SGPT}, G6PC1 (glucose-6-phosphatase catalytic subunit 1) [NCBI Gene 2538] {aka G6PC, G6PT, G6Pase, GSD1, GSD1a}, PRKAB1 (protein kinase AMP-activated non-catalytic subunit beta 1) [NCBI Gene 5564] {aka AMPK, HAMPKb}, FASN (fatty acid synthase) [NCBI Gene 2194] {aka FAS, OA-519, SDR27X1}, IGF1R (insulin like growth factor 1 receptor) [NCBI Gene 3480] {aka CD221, IGFIR, IGFR, JTK13}, MIR222 (microRNA 222) [NCBI Gene 407007] {aka MIRN222, miRNA222, mir-222}, MIR33A (microRNA 33a) [NCBI Gene 407039] {aka MIR33, MIRN33, MIRN33A, hsa-mir-33, hsa-mir-33a, miR-33}, MTOR (mechanistic target of rapamycin kinase) [NCBI Gene 2475] {aka FRAP, FRAP1, FRAP2, RAFT1, RAPT1, SKS}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, DROSHA (drosha ribonuclease III) [NCBI Gene 29102] {aka ETOHI2, HSA242976, RANSE3L, RN3, RNASE3L, RNASEN}
- **Diseases:** hepatotoxic drugs (MESH:D000081015), systemic (MESH:D015619), hepatocellular carcinoma (MESH:D006528), diabetes (MESH:D003920), L (MESH:D007926), injury to (MESH:D014947), Insulin Resistance (MESH:D007333), NAFLD (MESH:D065626), obese (MESH:D009765), T2D (MESH:D003924), autoimmune liver disease (MESH:D008107), hypertension (MESH:D006973), lean (MESH:D013851), metabolic syndrome (MESH:D024821), liver or metabolic dysfunction (MESH:D017093), adiposity (MESH:D018205), -MAFLD (MESH:D005234), Inflammatory (MESH:D007249), viral hepatitis (MESH:D014777), metabolic (MESH:D008659), hepatocellular injury (MESH:D056486), fibrosis (MESH:D005355)
- **Chemicals:** alcohol (MESH:D000438), triglyceride (MESH:D014280), TRIzol (MESH:C411644), EDTA (MESH:D004492), lipid (MESH:D008055), TG (MESH:D013866), cholesterol (MESH:D002784), FPG (-), fatty acid (MESH:D005227), MDA (MESH:D008315), glucose (MESH:D005947)
- **Species:** Homo sapiens (human, species) [taxon 9606], Hysterothylacium sp. SA (species) [taxon 1884613]
- **Mutations:** AUC from 0, A1C

## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13024945/full.md

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Source: https://tomesphere.com/paper/PMC13024945