# Advances and prospects of genomic-assisted breeding in roots, tubers, and banana crops

**Authors:** Paterne A. Agre, Brigitte Uwimana, Edwige Gaby Nkouaya Mbanjo, Morag Ferguson, Ranjana Bhattacharjee, Moses Nyine, Vishnuvardhan Banda, Prasad Peteti, Sikirou Mouritala, Kayondo S. Ismail, Delphine Amah, Yao Kolombia, Michael Batte, Jaindra N. Tripathi, Valentine Nakato, Trushar Shah, Rony Swennen, Asrat Asfaw, Rabbi Y. Ismail, Leena Tripathi, Hapson Mushoriwa

PMC · DOI: 10.3389/fpls.2026.1744272 · Frontiers in Plant Science · 2026-03-04

## TL;DR

This paper reviews how genomic tools are improving breeding for important crops like banana, cassava, and yam to boost food security.

## Contribution

The paper synthesizes recent genomic-assisted breeding strategies and their application in RTB crops, emphasizing modernization and sustainability.

## Key findings

- Genomic tools like marker-assisted selection and genomic selection are being applied to improve RTB crops.
- Efforts to integrate digital tools and optimize breeding programs are helping overcome genetic complexity in RTB crops.
- Pan-genomics and gene editing are emerging as key strategies for trait discovery and improvement in RTB crops.

## Abstract

Roots, Tubers, and Bananas (RTB), including banana and plantain, cassava, yam, sweetpotato, and potato crops, share several defining features that set them apart from cereals and legumes. They are essential for food and nutritional security for hundreds of millions of people, especially in developing countries. Despite their significance, RTB crop breeding has lagged due to the complexity of genetics and the use of vegetative propagation. Recent advancements in genomics-assisted breeding (GAB) offer opportunities to accelerate genetic gains. This review provides an updated synthesis of genomic tools and associated strategies applied in RTB breeding, with a focus on banana and plantain, cassava, and yam. It spans the recent development and application of genomic tools, from diversity studies and trait discovery to marker-assisted selection, genomic selection, pan-genomics, and gene editing. It also highlights the efforts to modernize RTB breeding through program optimization and digital tool integration. The review concludes by suggesting future directions for sustainable impact.

## Full-text entities

- **Species:** Ipomoea batatas (batate, species) [taxon 4120], Manihot esculenta (cassava, species) [taxon 3983], Solanum tuberosum (potatoes, species) [taxon 4113], Musa acuminata (banana, species) [taxon 4641]

## Full text

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## Figures

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## References

171 references — full list in the complete paper: https://tomesphere.com/paper/PMC13024393/full.md

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Source: https://tomesphere.com/paper/PMC13024393