# Probiotic Bacillus subtilis, but Not a Lactobacillus spp., Ameliorates Cognitive Impairment in a Mouse Model of LPS and Zidovudine-Induced Neuroinflammation

**Authors:** Olga Murgina, Ksenia Stafeeva, Sofya Karaulova, Alena Vostrikova, Sofya Kononova, Daria Chursina, Svetlana Pozdeeva, Anastasia Makogonova, Inna Burakova, Svetlana Pogorelova, Polina Morozova, Yulia Smirnova, Mikhail Syromyatnikov, Viktor Shutikov, Evgeny Mikhailov, Artem Gureev

PMC · DOI: 10.3390/brainsci16030340 · Brain Sciences · 2026-03-21

## TL;DR

A probiotic called Bacillus subtilis helps improve brain function and gut health in mice exposed to LPS and Zidovudine, while a lactobacilli mix worsens outcomes.

## Contribution

Bacillus subtilis, but not lactobacilli, prevents cognitive and gut damage in a mouse model of neuroinflammation.

## Key findings

- Bacillus subtilis reduces neuroinflammation and cognitive deficits in mice exposed to LPS and Zidovudine.
- Lactobacillus spp. mixture worsens intestinal damage and cognitive dysfunction in the same model.
- Bacillus subtilis activates the PINK1/PTEN-dependent mitophagy pathway and restores gut microbial diversity.

## Abstract

What are the main findings?
•LPS + ZDV cause gut–brain axis dysfunction in mice.•B. subtilis probiotic improves cognition and gut health.

LPS + ZDV cause gut–brain axis dysfunction in mice.

B. subtilis probiotic improves cognition and gut health.

What are the implications of the main findings?
•It reduces brain mitochondrial damage and systemic inflammation.•Lactobacillus spp. Mix is ineffective and harmful to intestines.

It reduces brain mitochondrial damage and systemic inflammation.

Lactobacillus spp. Mix is ineffective and harmful to intestines.

Background/Objectives: The gut–brain axis is increasingly recognized as a critical modulator of cognitive function. This study investigated the neurotoxic effects of combined exposure to bacterial lipopolysaccharide (LPS) and the antiretroviral drug zidovudine (ZDV) in a mouse model, and evaluated the protective potential of two probiotic interventions: Bacillus subtilis and a mixture of lactobacilli. Methods: Cognitive function was assessed using the Morris water maze (MWM). Gut microbiota composition was analyzed by 16S rRNA sequencing, and intestinal morphology was examined histologically. Gene expression of neuroinflammatory markers and mitophagy-related genes in brain tissue was quantified by RT-PCR. Plasma levels of cell-free mitochondrial DNA (cf-mtDNA) were measured as a marker of mitochondrial damage. Results: Combined LPS + ZDV exposure induced systemic inflammation, impaired spatial memory, damaged the intestinal mucosa, and caused dysbiosis characterized by an increase in pro-inflammatory Muribaculaceae. In the brain, LPS + ZDV significantly upregulated Tnfa expression, confirming neuroinflammation. Bacillus subtilis administration prevented cognitive deficits, maintained Tnfa at control levels, and significantly reduced Il1b and Il6 expression compared to the LPS + ZDV group. This was accompanied by activation of the PINK1/PTEN-dependent mitophagy pathway, prevention of cf-mtDNA release, and restoration of gut microbial diversity. In contrast, the Lactobacilli mixture not only failed to improve outcomes but was associated with exacerbated intestinal damage, more pronounced cognitive dysfunction, and no reduction in neuroinflammatory markers. Conclusions: Combined exposure to LPS and ZDV induces gut–brain axis dysfunction characterized by neuroinflammation, cognitive impairment, intestinal damage, and dysbiosis. Bacillus subtilis effectively preserves cognitive function through activation of PINK1/PTEN-dependent mitophagy and suppression of neuroinflammation, highlighting its potential as a therapeutic candidate for cognitive impairments associated with gut–brain axis dysfunction. The contrasting effects of the lactobacilli mixture underscore the critical importance of strain-specificity in probiotic interventions.

## Linked entities

- **Genes:** TNF (tumor necrosis factor) [NCBI Gene 7124], IL1B (interleukin 1 beta) [NCBI Gene 3553], IL6 (interleukin 6) [NCBI Gene 3569], PINK1 (PTEN induced kinase 1) [NCBI Gene 65018], PTEN (phosphatase and tensin homolog) [NCBI Gene 5728]
- **Chemicals:** Zidovudine (PubChem CID 35370)
- **Species:** Bacillus subtilis (taxon 1423), Muribaculaceae (taxon 2005473)

## Full-text entities

- **Genes:** Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, Serpinb1-ps1 (serine (or cysteine) peptidase inhibitor, clade B, member 1, pseudogene) [NCBI Gene 282665] {aka EID, ovalbumin}, F2 (coagulation factor II) [NCBI Gene 14061] {aka Cf-2, Cf2, FII}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}
- **Diseases:** cardiac diseases (MESH:D006331), intestinal damage (MESH:D007410), sarcopenia (MESH:D055948), obese (MESH:D009765), inflammatory bowel diseases (MESH:D015212), schizophrenia (MESH:D012559), stroke (MESH:D020521), axis dysfunction (MESH:C566610), injury to (MESH:D014947), septic shock (MESH:D012772), HIV infection (MESH:D015658), diabetes (MESH:D003920), mitochondrial damage (MESH:D028361), gastrointestinal infections (MESH:D005767), degenerative diseases (MESH:D019636), systemic (MESH:D015619), acute pancreatitis (MESH:D010195), dysbiosis (MESH:D064806), acute (MESH:D000208), cardiovascular, (MESH:D002318), toxicity (MESH:D064420), Neuroinflammation (MESH:D000090862), neurotoxic (MESH:D020258), Parkinson's disease (MESH:D010300), Cognitive Impairment (MESH:D003072), overweight (MESH:D050177), gut-brain axis disorders (MESH:D001927), cancer (MESH:D009369), weight loss (MESH:D015431), multiple sclerosis (MESH:D009103), endotoxemia (MESH:D019446), ulcerative colitis (MESH:D003093), migraine (MESH:D008881), paralysis (MESH:D010243), dislocation (MESH:D004204), autoimmune diseases (MESH:D001327), metabolic dysfunction (MESH:D008659), anxiety (MESH:D001007), traumatic brain injury (MESH:D000070642), impairments in spatial memory (MESH:D008569), fatty liver disease (MESH:D005234), Chronic inflammation (MESH:D007249), diarrhea (MESH:D003967), Eosinophilia (MESH:D004802), neurological disorders (MESH:D009461), Alzheimer's disease (MESH:D000544), hepatomegaly (MESH:D006529)
- **Chemicals:** ethanol (MESH:D000431), ZDV (MESH:D015215), Zoletil (MESH:C006131), hydrogen sulfide (MESH:D006862), agarose (MESH:D012685), D-lactate (-), polysaccharides (MESH:D011134), sodium citrate (MESH:D000077559), alcohol (MESH:D000438), eosin (MESH:D004801), zolazepam (MESH:D015041), arginine (MESH:D001120), methyl alcohol (MESH:D000432), formalin (MESH:D005557), tiletamine (MESH:D013992), paraffin (MESH:D010232), O-xylene (MESH:C026114), Xylazine (MESH:D014991), SCFAs (MESH:D005232), water (MESH:D014867), glucose (MESH:D005947), carrageenan (MESH:D002351), hematoxylin (MESH:D006416), isovaleric acid (MESH:C008216), dextran sulfate sodium (MESH:D016264), ATP (MESH:D000255), LPS (MESH:D008070)
- **Species:** gut metagenome (species) [taxon 749906], Bacteroidota (Bacteroides-Cytophaga-Flexibacter group, phylum) [taxon 976], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Lacticaseibacillus paracasei (species) [taxon 1597], Lactiplantibacillus plantarum (species) [taxon 1590], Caenorhabditis elegans (species) [taxon 6239], Akkermansia muciniphila (species) [taxon 239935], Mus musculus (house mouse, species) [taxon 10090], Rodentia (rodent, order) [taxon 9989], Philonthus vulgatus (species) [taxon 1896615], Bacteroidaceae (family) [taxon 815], Duncaniella muris (species) [taxon 2094150], Homo sapiens (human, species) [taxon 9606], Sangeribacter muris (species) [taxon 2880703], Rattus norvegicus (brown rat, species) [taxon 10116], Sutterella wadsworthensis (species) [taxon 40545], Phocaeicola (genus) [taxon 909656], Barnesiella sp. (species) [taxon 2033407], Phascolarctobacterium succinatutens (species) [taxon 626940], Lactobacillus helveticus (species) [taxon 1587], Bacillus subtilis (species) [taxon 1423]

## Full text

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## Figures

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## References

77 references — full list in the complete paper: https://tomesphere.com/paper/PMC13024221/full.md

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Source: https://tomesphere.com/paper/PMC13024221