# Targeting Mettl8-Tcf1 axis promotes CD8+ TPEX differentiation and antitumor immunity

**Authors:** Jiaxi Song, Dan Cui, Jiabao Wang, Xuewei Qi, Jiaxin Ma, Qing Liu, Jing Yang, Haoyu Yu, Lilin Ye, Qizhao Huang, Jia Li, Fengyin Li

PMC · DOI: 10.1084/jem.20250424 · The Journal of Experimental Medicine · 2026-03-27

## TL;DR

A new study shows that targeting Mettl8 helps convert exhausted T cells into more effective forms, improving cancer immunotherapy.

## Contribution

The study identifies Mettl8 as a novel regulator of TPEX cell differentiation through m3C modification and chromatin looping.

## Key findings

- Mettl8 deletion or inhibition promotes TPEX differentiation into Int-TEX cells, reducing tumor growth.
- Mettl8 stabilizes Tcf7 mRNA and enhances Tcf1 protein expression to maintain TPEX stemness.
- Pharmacological Mettl8 inhibition synergizes with anti–PD-1 therapy to improve antitumor immunity.

## Abstract

The study reveals that Mettl8 maintains stem-like TPEX cells by stabilizing Tcf1 via m3C modification and facilitating chromatin looping at the Tox locus. Its deletion or inhibition drives TPEX differentiation into effective Int-TEX cells, restraining tumor growth and synergizing with anti–PD-1 therapy, thus presenting a promising immunotherapeutic target.

CD8+ T cell exhaustion represents a major obstacle to effective cancer immunotherapy. While stem-like progenitor exhausted T (TPEX) cells can differentiate into intermediate (Int-TEX) and terminally exhausted (TEX) subsets, the epigenetic regulation of this process is unclear. We identify the RNA methyltransferase Mettl8 as a critical regulator, with expression significantly higher in TPEX than in TEX subsets. In anti–PD-1 responding non-small cell lung cancer patients, Mettl8 and the stemness factor TCF7 were downregulated. In murine models, Mettl8 deletion restrained tumor progression by driving TPEX differentiation into effective Int-TEX cells. Mechanistically, Mettl8 stabilizes Tcf7 mRNA via m3C modification and enhances Tcf1 protein expression. Additionally, Mettl8 interacts with Tcf1 to facilitate chromatin looping at the Tox locus, maintaining TPEX stemness. Pharmacological Mettl8 inhibition promoted TPEX-to-Int-TEX differentiation and tumor control. Combining this inhibition with anti–PD-1 therapy yielded synergistic efficacy. Our findings establish Mettl8 as a pivotal regulator of TPEX fate and a promising therapeutic target for enhancing immunotherapy.

## Linked entities

- **Genes:** METTL8 (methyltransferase 8, tRNA N3-cytidine) [NCBI Gene 79828], TCF7 (transcription factor 7) [NCBI Gene 6932], HNF1A (HNF1 homeobox A) [NCBI Gene 6927], TOX (thymocyte selection associated high mobility group box) [NCBI Gene 9760]
- **Proteins:** HNF1A (HNF1 homeobox A)
- **Diseases:** non-small cell lung cancer (MONDO:0005233)

## Full-text entities

- **Genes:** Havcr2 (hepatitis A virus cellular receptor 2) [NCBI Gene 171285] {aka TIM-3, Tim3, Timd3}, Cd28 (CD28 antigen) [NCBI Gene 12487], Irf8 (interferon regulatory factor 8) [NCBI Gene 15900] {aka ICSBP, IRF-8, Icsbp1, Myls}, Bcl6 (B cell leukemia/lymphoma 6) [NCBI Gene 12053] {aka Bcl5}, Cxcr5 (C-X-C motif chemokine receptor 5) [NCBI Gene 12145] {aka Blr1, CXC-R5, CXCR-5, Gpcr6, MDR15}, Tox (thymocyte selection-associated high mobility group box) [NCBI Gene 252838] {aka 1700007F02Rik}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}, Dnase1 (deoxyribonuclease I) [NCBI Gene 13419] {aka DNaseI, Dnl1}, Kmt2a (lysine (K)-specific methyltransferase 2A) [NCBI Gene 214162] {aka 6430520K01, ALL-1, All1, Cxxc7, HRX, HTRX1}, Tcrb (T cell receptor beta chain) [NCBI Gene 21577] {aka TCRbeta, Tib}, Prdm1 (PR domain containing 1, with ZNF domain) [NCBI Gene 12142] {aka Blimp-1, Blimp1, PRDI-BF1, ZNFPR1A1, b2b1765Clo}, Mettl8 (methyltransferase 8, methylcytidine) [NCBI Gene 228019] {aka Tip}, HAVCR2 (hepatitis A virus cellular receptor 2) [NCBI Gene 84868] {aka CD366, HAVcr-2, KIM-3, SPTCL, TIM3, TIMD-3}, Myb (Myb proto-oncogene, transcription factor) [NCBI Gene 17863] {aka c-myb}, Cd101 (CD101 antigen) [NCBI Gene 630146] {aka EWI-101, Gm1016, Gm734, Igsf2}, Actb (actin, beta) [NCBI Gene 11461] {aka Actx, E430023M04Rik, beta-actin}, Neb (nebulin) [NCBI Gene 17996], Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, Rag1 (recombination activating 1) [NCBI Gene 19373] {aka Rag-1}, Il2 (interleukin 2) [NCBI Gene 16183] {aka Il-2}, Foxp3 (forkhead box P3) [NCBI Gene 20371] {aka JM2, scurfin, sf}, Bach2 (BTB and CNC homology, basic leucine zipper transcription factor 2) [NCBI Gene 12014] {aka E030004N02Rik}, Ighv1-9 (immunoglobulin heavy variable 1-9) [NCBI Gene 668478] {aka Gm16697, Igg2a}, Pvrig (poliovirus receptor related immunoglobulin domain containing) [NCBI Gene 102640920] {aka Gm36869}, Gzmb (granzyme B) [NCBI Gene 14939] {aka CCP-1/C11, CCP1, Ctla-1, Ctla1, GZB}, CD8A (CD8 subunit alpha) [NCBI Gene 925] {aka CD8, CD8alpha, IMD116, Leu2, p32}, Gzmk (granzyme K) [NCBI Gene 14945], Lef1 (lymphoid enhancer binding factor 1) [NCBI Gene 16842] {aka 3000002B05, Lef-1}, Tcf7 (transcription factor 7, T cell specific) [NCBI Gene 21414] {aka TCF-1, Tcf1}, Irf4 (interferon regulatory factor 4) [NCBI Gene 16364] {aka IRF-4, LSIRF, NF-EM5, Spip}, Cd274 (CD274 antigen) [NCBI Gene 60533] {aka A530045L16Rik, B7h1, Pdcd1l1, Pdcd1lg1, Pdl1}, Cd19 (CD19 antigen) [NCBI Gene 12478], Cx3cr1 (C-X3-C motif chemokine receptor 1) [NCBI Gene 13051] {aka mCX3CR1}, Gapdh (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 14433] {aka Gapd}, Mettl3 (methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit) [NCBI Gene 56335] {aka 2310024F18Rik, M6A, Spo8}, Xcl1 (chemokine (C motif) ligand 1) [NCBI Gene 16963] {aka ATAC, LTN, Lptn, SCM-1, SCM-1a, Scyc1}, Ptprc (protein tyrosine phosphatase receptor type C) [NCBI Gene 19264] {aka B220, CD45R, Cd45, L-CA, Ly-5, Lyt-4}, Cd247 (CD247 antigen) [NCBI Gene 12503] {aka 4930549J05Rik, A430104F18Rik, Cd3, Cd3-eta, Cd3-zeta, Cd3h}, Trav6-3 (T cell receptor alpha variable 6-3) [NCBI Gene 328483] {aka Gm13948, Gm193, Gm4, TCR}, Tbx21 (T-box 21) [NCBI Gene 57765] {aka TBT1, Tbet, Tblym}, Cd69 (CD69 antigen) [NCBI Gene 12515] {aka 5830438K24Rik, AIM, VEA}, Cd24a (CD24a antigen) [NCBI Gene 12484] {aka Cd24, HSA, Ly-52, nectadrin}, Ctcf (CCCTC-binding factor) [NCBI Gene 13018], Runx3 (runt related transcription factor 3) [NCBI Gene 12399] {aka AML2, Cbfa3, Pebp2a3, Rx3}, Cd44 (CD44 antigen) [NCBI Gene 12505] {aka HERMES, Ly-24, Pgp-1}, Klrc1 (killer cell lectin-like receptor subfamily C, member 1) [NCBI Gene 16641] {aka CD159a, NKG2A, NKG2B}, Id2 (inhibitor of DNA binding 2) [NCBI Gene 15902] {aka Idb2, bHLHb26}, Il2ra (interleukin 2 receptor, alpha chain) [NCBI Gene 16184] {aka CD25, Il2r, Ly-43}, Batf (basic leucine zipper transcription factor, ATF-like) [NCBI Gene 53314] {aka B-ATF, SFA-2}, Ifng (interferon gamma) [NCBI Gene 15978] {aka IFN-g, If2f, Ifg}, TCF7 (transcription factor 7) [NCBI Gene 6932] {aka TCF-1}, Sell (selectin, lymphocyte) [NCBI Gene 20343] {aka CD62L, L-selectin, LAM-1, LECAM-1, LECAM1, Lnhr}, Lag3 (lymphocyte-activation gene 3) [NCBI Gene 16768] {aka CD223, LAG-3, Ly66}, Zeb2 (zinc finger E-box binding homeobox 2) [NCBI Gene 24136] {aka 9130203F04Rik, D130016B08Rik, SIP1, Zfhx1b, Zfx1b, Zfxh1b}, Mki67 (antigen identified by monoclonal antibody Ki 67) [NCBI Gene 17345] {aka D630048A14Rik, Ki-67, Ki67}, Slamf6 (SLAM family member 6) [NCBI Gene 30925] {aka KAL1, KAL1b, Ly108, NTB-A, NTBA, SF2000}, Satb1 (special AT-rich sequence binding protein 1) [NCBI Gene 20230] {aka 2610306G12Rik}, Gzma (granzyme A) [NCBI Gene 14938] {aka Ctla-3, Ctla3, Hf, Hf1, SE1, TSP-1}, PDCD1 (programmed cell death 1) [NCBI Gene 5133] {aka ADMIO4, AIMTBS, CD279, PD-1, PD1, SLEB2}, Entpd1 (ectonucleoside triphosphate diphosphohydrolase 1) [NCBI Gene 12495] {aka 2610206B08Rik, ATP-DPH, Cd39, E130009M23Rik, NTPDase-1}
- **Diseases:** CRC (MESH:D015179), cytotoxicity (MESH:D064420), NSCLC (MESH:D002289), TPEX (MESH:D010300), liver metastases (MESH:D009362), OT-I (MESH:D006969), LCMV infection (MESH:D007239), mycoplasma (MESH:D009175), TEX (MESH:D006359), colon adenocarcinoma (MESH:D003110), enteritis (MESH:D004751), weight loss (MESH:D015431), Tumor (MESH:D009369), viral infections (MESH:D014777), chronic lymphocytic leukemia (MESH:D015451), Melanoma (MESH:D008545)
- **Chemicals:** biotin (MESH:D001710), GA (MESH:C112485), HEPES (MESH:D006531), nivolumab (MESH:D000077594), spermidine (MESH:D013095), SDS (MESH:D012967), monensin (MESH:D008985), N6-methyladenosine (MESH:C010223), m6A (MESH:C005955), Percoll (MESH:C016039), -T (MESH:D014316), NP-40 (MESH:C010615), Triton X-100 (MESH:D017830), Lipofectamine 2000 (MESH:C086724), dGTP (MESH:C029603), streptomycin (MESH:D013307), 1xCutSmart buffer (-), dTTP (MESH:C024157), H2O (MESH:D014867), NaCl (MESH:D012965), PEG300 (MESH:C000595211), digitonin (MESH:D004072), dCTP (MESH:C024107), actinomycin D (MESH:D003609), Tween-80 (MESH:D011136), penicillin (MESH:D010406), DMSO (MESH:D004121), PBS (MESH:D007854), spike (MESH:C010346), formaldehyde (MESH:D005557), aniline (MESH:C023650), 7-AAD (MESH:C025942), 2-mercaptoethanol (MESH:D008623), ionomycin (MESH:D015759)
- **Species:** LCMV [taxon 11623], Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090], Rattus norvegicus (brown rat, species) [taxon 10116]
- **Mutations:** D to H, lysine with arginine, S16009A
- **Cell lines:** TPEX — Homo sapiens (Human), Finite cell line (CVCL_3331), 293T — Homo sapiens (Human), Transformed cell line (CVCL_0063), PEX — Homo sapiens (Human), Chronic myelogenous leukemia, BCR-ABL1 positive, Cancer cell line (CVCL_XR53), B16-OVA — Mus musculus (Mouse), Mouse melanoma, Cancer cell line (CVCL_WM78), Int — Homo sapiens (Human), Finite cell line (CVCL_0638), OT-I — Homo sapiens (Human), Lung small cell carcinoma, Cancer cell line (CVCL_7021), S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), BE0089 — Homo sapiens (Human), Finite cell line (CVCL_F600), MC38 — Mus musculus (Mouse), Mouse colon adenocarcinoma, Cancer cell line (CVCL_B288), EG7 — Mus musculus (Mouse), Hybridoma (CVCL_RQ13), B16 — Mus musculus (Mouse), Hybridoma (CVCL_U043), B16F10 — Mus musculus (Mouse), Mouse melanoma, Cancer cell line (CVCL_0159)

## Full text

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## Figures

13 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13023788/full.md

## References

61 references — full list in the complete paper: https://tomesphere.com/paper/PMC13023788/full.md

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Source: https://tomesphere.com/paper/PMC13023788