# IBS and SIBO: Gut Microbiota, Pathophysiology, and Non-Pharmacological Interventions

**Authors:** Jelena Šuran, Nikola Pavlović, Joško Božić, Marko Kumrić, Katarina Vukojević, Natalija Filipović, Božo Radić

PMC · DOI: 10.3390/antibiotics15030251 · Antibiotics · 2026-02-27

## TL;DR

This paper reviews how gut bacteria and non-drug treatments affect IBS and SIBO, focusing on managing symptoms without antibiotics.

## Contribution

The paper provides an integrative framework for non-pharmacological interventions in IBS and SIBO, emphasizing microbiota interactions and reducing antibiotic use.

## Key findings

- Gut microbiota and their metabolites significantly influence IBS and SIBO symptoms like motility and inflammation.
- Non-antibiotic strategies such as diet, probiotics, and mind-body therapies show promise in managing IBS/SIBO symptoms.
- Methanogen overgrowth is linked to constipation-predominant IBS, while hydrogen and hydrogen sulfide are associated with diarrhea and bloating.

## Abstract

Irritable bowel syndrome (IBS) and small intestinal bacterial overgrowth (SIBO) share symptoms such as abdominal pain, bloating, and altered bowel habits. Both are linked to dysbiosis and gut–brain axis dysfunction. IBS is a multifactorial disorder characterized by abnormal motility, visceral hypersensitivity, low-grade inflammation, and alterations in the microbiota. In contrast, SIBO is defined by excessive bacterial colonization of the small intestine that can mimic or worsen IBS symptoms. Gut microbes and their metabolites influence motility, immune activation, barrier integrity, and gas production; methanogen overgrowth is associated with constipation-predominant presentations, while hydrogen- and hydrogen sulfide-related pathways may contribute to diarrhea and bloating. Because recurrent or empiric antibiotic use is common—particularly in suspected SIBO—yet carries risks of resistance, microbiome disruption, and relapse, there is a strong rationale to prioritize effective non-antibiotic strategies. Accordingly, this review synthesizes current evidence on IBS/SIBO pathophysiology and microbiota interactions. It evaluates non-pharmacological interventions including dietary approaches, probiotics/prebiotics, herbal therapies, and mind–body treatments (e.g., cognitive behavioral therapy and gut-directed hypnotherapy). We emphasize an integrative framework that supports symptom control and quality of life while helping reduce unnecessary antibiotic exposure.

## Linked entities

- **Diseases:** Irritable bowel syndrome (MONDO:0005052), small intestinal bacterial overgrowth (MONDO:0400000)

## Full-text entities

- **Genes:** TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}, NR1H4 (nuclear receptor subfamily 1 group H member 4) [NCBI Gene 9971] {aka BAR, FXR, HRR-1, HRR1, PFIC5, RIP14}, CRP (C-reactive protein) [NCBI Gene 1401] {aka PTX1}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, LCT (lactase) [NCBI Gene 3938] {aka LAC, LPH, LPH1}
- **Diseases:** inflammation (MESH:D007249), celiac (MESH:D002446), lactose intolerance (MESH:D007787), gut dysfunction (MESH:C535334), hypersensitivity (MESH:D004342), lactase deficiency (MESH:C562600), gastroenteritis (MESH:D005759), visceral pain (MESH:D059265), Gut (MESH:C536735), anxiety (MESH:D001007), H. pylori-infected (MESH:D016481), short bowel syndrome (MESH:D012778), diarrhea (MESH:D003967), Crohn's disease (MESH:D003424), ulcerative colitis (MESH:D003093), brain axis dysfunction (MESH:D001927), dysfunction of the migrating motor complex (MESH:D014085), weight gain (MESH:D015430), gastrointestinal symptoms (MESH:D012817), visceral hyperalgesia (MESH:D006930), disorder of (MESH:D009358), IBS (MESH:D043183), motility dysfunction (MESH:D015835), scleroderma (MESH:D012595), abnormal motility (MESH:C563515), dyspepsia (MESH:D004415), diabetes (MESH:D003920), nutrient deficiencies (MESH:D007153), GI (MESH:D005767), abdominal discomfort (MESH:D000007), heartburn (MESH:D006356), mood disorder (MESH:D019964), dysbiosis (MESH:D064806), intestinal strictures (MESH:D003251), pain (MESH:D010146), overload (MESH:D019190), depression (MESH:D003866), gastrointestinal dysmotility (MESH:D015154), Bacterial (MESH:D001424), bloating (MESH:C535647), chronic constipation (MESH:D003248), IMO (MESH:D007410), Clostridioides difficile infection (MESH:D003015), diseases (MESH:D004194), abdominal pain (MESH:D015746), infection (MESH:D007239), D (MESH:D014808), injury to (MESH:D014947), flatulence (MESH:D005414), SIBO (MESH:D001765), IBD (MESH:D015212), carbohydrate malabsorption (MESH:D008286)
- **Chemicals:** polyols (MESH:C024617), guar gum (MESH:C007894), indole (MESH:C030374), butyrate (MESH:D002087), glucose (MESH:D005947), allicin (MESH:C006452), SCFA (MESH:D005232), water (MESH:D014867), Carbohydrate (MESH:D002241), choline (MESH:D002794), alkaloid (MESH:D000470), Peppermint oil (MESH:C015424), kynurenine (MESH:D007737), menthol (MESH:D008610), oligosaccharides (MESH:D009844), rifaximin (MESH:D000078262), PI (MESH:D010716), fructose (MESH:D005632), BAs (MESH:D001647), amino acid (MESH:D000596), histamine (MESH:D006632), fiber (MESH:D004043), Lactose (MESH:D007785), indoles (MESH:D007211), serotonin (MESH:D012701), caffeine (MESH:D002110), starches (MESH:D013213), tryptophan (MESH:D014364), disaccharide (MESH:D004187), pectin (MESH:D010368), FOS (MESH:C116580), mannitol (MESH:D008353), propionate (MESH:D011422), inulin (MESH:D007444), sulfide (MESH:D013440), sorbitol (MESH:D013012), monosaccharides (MESH:D009005), Prebiotics (MESH:D056692), Berberine (MESH:D001599), alcohol (MESH:D000438), polyamines (MESH:D011073), Glutamine (MESH:D005973), lactulose (MESH:D007792), sulfate (MESH:D013431), FODMAP (-), luminal (MESH:D010634), H2 (MESH:D006859), calcium (MESH:D002118), CH4 (MESH:D008697), H2S (MESH:D006862)
- **Species:** Bacteroides (genus) [taxon 816], Prevotella (genus) [taxon 838], Bifidobacterium longum (species) [taxon 216816], Malus domestica (apple, species) [taxon 3750], Lactobacillus (genus) [taxon 1578], Escherichia coli (E. coli, species) [taxon 562], Enterococcus (genus) [taxon 1350], Klebsiella (genus) [taxon 570], Allium sativum (garlic, species) [taxon 4682], Berberis vulgaris (common barberry, species) [taxon 258209], Bacillota (clostridial firmicutes, phylum) [taxon 1239], Methanobrevibacter smithii (species) [taxon 2173], Carum carvi (caraway, species) [taxon 48032], Pseudomonadota (proteobacteria, phylum) [taxon 1224], Pyrus communis (pear, species) [taxon 23211], Zingiber officinale (ginger, species) [taxon 94328], Bifidobacterium bifidum (species) [taxon 1681], Allium cepa (onion, species) [taxon 4679], Streptococcus (genus) [taxon 1301], Homo sapiens (human, species) [taxon 9606], gut metagenome (species) [taxon 749906], Avena sativa (cultivated oat, species) [taxon 4498], Mangifera indica (mango, species) [taxon 29780], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Heyndrickxia coagulans (species) [taxon 1398], Curcuma longa (turmeric, species) [taxon 136217]

## Full text

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## Figures

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## References

100 references — full list in the complete paper: https://tomesphere.com/paper/PMC13023761/full.md

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Source: https://tomesphere.com/paper/PMC13023761