# Recent Progress on Carbon-Dots-Based Probes for Microbial Labeling and Versatile Analysis Applications

**Authors:** Ying Liu, Ping Yu, Jinhua Li, Yang Liu, Ming Ma, Sihua Qian, Yuhui Wang, Yunwei Wei

PMC · DOI: 10.3390/bios16030137 · Biosensors · 2026-02-26

## TL;DR

This paper reviews how carbon dots can be used as fluorescent probes for detecting and labeling microorganisms with high sensitivity and specificity.

## Contribution

The paper systematically reviews recent advances in carbon-dot-based strategies for microbial detection and highlights future directions.

## Key findings

- Carbon dots offer advantages like small size, optical properties, and biocompatibility for microbial labeling.
- Multiple sensing technologies like fluorescence, electrochemistry, and SERS are explored for microbial detection.
- Challenges include simultaneous detection of multiple pathogens and in vivo tracking.

## Abstract

Microbial imbalance and the spread of pathogenic microorganisms pose severe threats to human health and ecological security. Traditional microbial detection methods suffer from several drawbacks such as long detection time, low sensitivity, and insufficient specificity. As an emerging fluorescent probe, carbon dots (CDs) offer an innovative direction for microbial labeling and detection due to their ultra-small particle size, unique optical properties, excellent biocompatibility, and facile surface modifiability. Herein, this article reviews the research progress of CDs on microbial labeling and detection. The content covers a brief introduction of CDs and explores the main recognition strategies including non-covalent interactions and biomolecule-mediated targeted binding. It also elaborates on the application status of multi-modal sensing technologies for microbial detection, such as CDs-based fluorescent sensing, electrochemical sensing, and surface-enhanced Raman scattering (SERS) sensing. Additionally, the challenges faced in current research, such as achieving simultaneous detection of multiple pathogens and in vivo dynamic tracking, are analyzed, and the development prospects of CDs in fields like clinical diagnosis and public health monitoring are prospected. This review aims to provide comprehensive references for further research and application of CDs in the field of microbial detection.

## Full-text entities

- **Genes:** CNTN2 (contactin 2) [NCBI Gene 6900] {aka AXT, EPEO5, FAME5, TAG-1, TAX, TAX1}, N (nucleocapsid phosphoprotein) [NCBI Gene 43740575], IVNS1ABP (influenza virus NS1A binding protein) [NCBI Gene 10625] {aka ARA3, FLARA3, HSPC068, IMD70, KLHL39, ND1}
- **Diseases:** VRE (MESH:D060467), hemorrhagic fever with thrombocytopenia syndrome virus (MESH:D006482), SARS-CoV-2 (MESH:D000086382), cervical cancer (MESH:D002583), cytotoxicity (MESH:D064420), deaths (MESH:D003643), bacterial infections (MESH:D001424), metal (MESH:D013651), infection (MESH:D007239), microbial infections (MESH:D015163), injury to (MESH:D014947), CDs (MESH:D000080363), adult T-cell leukemia (MESH:D015459), viral infection (MESH:D014777)
- **Chemicals:** carbapenem (MESH:D015780), Au (MESH:D006046), B (MESH:D001895), sulfuric acid (MESH:C033158), polysaccharide (MESH:D011134), urea (MESH:D014508), N (MESH:D009584), glucose (MESH:D005947), lipid (MESH:D008055), CDP (MESH:D003565), Dabcyl (MESH:C063127), agar (MESH:D000362), ammonium citrate (MESH:C481046), water (MESH:D014867), ITO (MESH:C109984), Ag (MESH:D012834), SiO2 (MESH:D012822), AmpB (MESH:D000666), ascorbic acid (MESH:D001205), LPS (MESH:D008070), EDC (MESH:C024565), PEI (MESH:D011094), carbon nanotubes (MESH:D037742), GO (MESH:C000628730), alginate (MESH:D000464), graphene (MESH:D006108), sulfur (MESH:D013455), ampicillin (MESH:D000667), Pt (MESH:D010984), alcohol (MESH:D000438), polyene (MESH:D011090), oligonucleotide (MESH:D009841), ergosterol (MESH:D004875), chloramphenicol (MESH:D002701), phospholipids (MESH:D010743), polyethylene glycol (MESH:D011092), Van (MESH:D014640), oxygen (MESH:D010100), VOCs (MESH:D055549), carbon (MESH:D002244), phosphate (MESH:D010710), ethylenediamine (MESH:C031234), gallic acid (MESH:D005707), cysteamine (MESH:D003543), CD (-), F (MESH:D005461), diammonium citrate (MESH:C426729), citric acid (MESH:D019343), nitric acid (MESH:D017942), guanosine (MESH:D006151), molybdenum (MESH:D008982), hydrogen (MESH:D006859), glucan (MESH:D005936), Curcumin (MESH:D003474), Amikacin (MESH:D000583)
- **Species:** Salmonella (genus) [taxon 590], Enterococcus faecalis (species) [taxon 1351], Candida albicans (species) [taxon 5476], Zika virus (no rank) [taxon 64320], Escherichia coli O157:H7 (no rank) [taxon 83334], Malus domestica (apple, species) [taxon 3750], Klebsiella pneumoniae (species) [taxon 573], Escherichia coli (E. coli, species) [taxon 562], Helicobacter pylori (species) [taxon 210], Orthomyxoviridae (family) [taxon 11308], hepatitis C virus [taxon 11103], Carica papaya (mamon, species) [taxon 3649], Homo sapiens (human, species) [taxon 9606], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049], Escherichia coli DH5[alpha] (strain) [taxon 668369], Human T-cell leukemia virus type I (no rank) [taxon 11908], Norovirus (genus) [taxon 142786], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Staphylococcus aureus (species) [taxon 1280], Human papillomavirus 16 (serotype) [taxon 333760], Enterobacteriaceae (enterobacteria, family) [taxon 543]

## Full text

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## Figures

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## References

142 references — full list in the complete paper: https://tomesphere.com/paper/PMC13023463/full.md

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Source: https://tomesphere.com/paper/PMC13023463