# An HBV‐Derived Peptide Poly6 as a Novel Candidate for Functional Cure Via IFN‐I–Mediated Epigenetic Regulation of cccDNA

**Authors:** Junghwa Jang, Dong Hyun Kim, Ziyun Kim, Eunseo Kim, Yu‐Min Choi, Bum‐Joon Kim

PMC · DOI: 10.1002/jmv.70877 · Journal of Medical Virology · 2026-03-27

## TL;DR

A new HBV-derived peptide called Poly6 shows promise in reducing viral DNA and improving HBV treatment through interferon signaling and epigenetic changes.

## Contribution

Poly6 is a novel HBV-derived peptide that induces IFN-I and epigenetically silences cccDNA, offering a new therapeutic strategy for HBV.

## Key findings

- Poly6 reduces cccDNA, pregenomic RNA, and viral DNA without cytotoxicity.
- Poly6 activates IFN-I through mitochondrial stress and STING–IRF3 pathway.
- IFN-I promotes ISG expression and epigenetic silencing of cccDNA via histone hypoacetylation.

## Abstract

Covalently closed circular DNA (cccDNA) represents the central obstacle to achieving a functional cure for chronic hepatitis B virus (HBV) infection. Poly6, a peptide encoded within the HBV genome, was investigated for antiviral efficacy in hepatocyte‐derived cell lines, hydrodynamic injection models, and HBV transgenic mice. Poly6 administration markedly decreased cccDNA, pregenomic RNA, and viral DNA without detectable cytotoxicity. Poly6 also showed synergistic antiviral effects with entecavir. Mechanistic analyzes demonstrated that Poly6 initiates parallel upstream events: mitochondrial stress resulting in oxidized mtDNA release and activation of the STING–IRF3 pathway, and induction of IFI16, a nuclear DNA sensor implicated in interferon regulation. Both signals converged on robust type I interferon (IFN‐I) production. The IFN‐I response subsequently promoted expression of canonical ISGs, including iNOS, which generated nitric oxide to disrupt nucleocapsid assembly. Concurrently, IFI16, whose abundance was further increased by interferon signaling, amplified IFN‐I production and imposed epigenetic silencing of cccDNA through Sp1 sequestration and histone hypoacetylation. Chromatin immunoprecipitation confirmed reduced acetylation of H3K27, H4K5, and H4K12 on cccDNA minichromosomes. These results delineate a unified IFN‐I–centered cascade in which Poly6 coordinates complementary antiviral activities, supporting its translational potential as a therapeutic candidate for durable HBV control.

## Linked entities

- **Genes:** STING1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 340061], IRF3 (interferon regulatory factor 3) [NCBI Gene 3661], IFI16 (interferon gamma inducible protein 16) [NCBI Gene 3428], NOS2 (nitric oxide synthase 2) [NCBI Gene 4843], SP1 (Sp1 transcription factor) [NCBI Gene 6667]
- **Diseases:** chronic hepatitis B virus infection (MONDO:0005366)

## Full-text entities

- **Genes:** IFI16 (interferon gamma inducible protein 16) [NCBI Gene 3428] {aka IFNGIP1, PYHIN2}, MAVS (mitochondrial antiviral signaling protein) [NCBI Gene 57506] {aka CARDIF, IPS-1, IPS1, VISA}, ISG15 (ISG15 ubiquitin like modifier) [NCBI Gene 9636] {aka G1P2, IFI15, IMD38, IP17, UCRP, hUCRP}, SLC10A1 (solute carrier family 10 member 1) [NCBI Gene 6554] {aka FHCA2, NTCP}, IFN1@ (interferon, type 1, cluster) [NCBI Gene 3438] {aka IFNA}, STING1 (stimulator of interferon response cGAMP interactor 1) [NCBI Gene 340061] {aka ERIS, MITA, MPYS, NET23, SAVI, STING}, OAS1 (2'-5'-oligoadenylate synthetase 1) [NCBI Gene 4938] {aka E18/E16, IFI-4, IMD100, OIAS, OIASI}, IFNAR1 (interferon alpha and beta receptor subunit 1) [NCBI Gene 3454] {aka AVP, CRF2-1, IFN-R-1, IFN-alpha-REC, IFNAR, IFNBR}, IRF3 (interferon regulatory factor 3) [NCBI Gene 3661] {aka IIAE7}, IFNB1 (interferon beta 1) [NCBI Gene 3456] {aka IFB, IFF, IFN-beta, IFNB}, IFNA1 (interferon alpha 1) [NCBI Gene 3439] {aka IFL, IFN, IFN-ALPHA, IFN-alphaD, IFNA13, IFNA@}, EP300 (EP300 lysine acetyltransferase) [NCBI Gene 2033] {aka KAT3B, MKHK2, RSTS2, p300}, ISYNA1 (inositol-3-phosphate synthase 1) [NCBI Gene 51477] {aka INO1, INOS, IPS, IPS 1, IPS-1}, GAPDH (glyceraldehyde-3-phosphate dehydrogenase) [NCBI Gene 2597] {aka G3PD, GAPD, HEL-S-162eP}, LHB (luteinizing hormone subunit beta) [NCBI Gene 3972] {aka CGB4, HH23, LSH-B, LSH-beta}, KRT88P (keratin 88, pseudogene) [NCBI Gene 85348] {aka HBC, KRT122P, KRTHBP3}, NOS2 (nitric oxide synthase 2) [NCBI Gene 4843] {aka HEP-NOS, INOS, NOS, NOS2A}, CGAS (cyclic GMP-AMP synthase) [NCBI Gene 115004] {aka C6orf150, D4, MB21D1, h-cGAS}, RIGI (RNA sensor RIG-I) [NCBI Gene 23586] {aka DDX58, RIG-I, RIG1, RLR-1, SGMRT2}, SP1 (Sp1 transcription factor) [NCBI Gene 6667], STAT1 (signal transducer and activator of transcription 1) [NCBI Gene 6772] {aka CANDF7, IMD31A, IMD31B, IMD31C, ISGF-3, STAT91}, Nos2 (nitric oxide synthase 2, inducible) [NCBI Gene 18126] {aka MAC-NOS, NOS-II, Nos-2, Nos2a, i-NOS, iNOS}, TLR9 (toll like receptor 9) [NCBI Gene 54106] {aka CD289}, PLAAT4 (phospholipase A and acyltransferase 4) [NCBI Gene 5920] {aka HRASLS4, HRSL4, PLA1/2-3, PLAAT-4, RARRES3, RIG1}
- **Diseases:** infection (MESH:D007239), HBV Infection (MESH:D006509), HIV-1 infection (MESH:D015658), TG (MESH:D004482), HCC (MESH:D006528), cytotoxicity (MESH:D064420), chronic hepatitis B virus (HBV) infection (MESH:D019694), cirrhosis (MESH:D005355), liver disease (MESH:D008107), Infectious Disease (MESH:D003141)
- **Chemicals:** nitric oxide (MESH:D009569), agarose (MESH:D012685), DIG (-), superoxide (MESH:D013481), Alexa 594 (MESH:C417664), SDS (MESH:D012967), Rotenone (MESH:D012402), MitoSOX (MESH:C521281), Nitrite (MESH:D009573), NA (MESH:D012964), Mito-TEMPO (MESH:C555916), DMSO (MESH:D004121), 8-OHdG (MESH:D000080242), ETV (MESH:C413685), NO (MESH:D009614), PEG-8000 (MESH:C000595216)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606], Hepatitis B virus (no rank) [taxon 10407]
- **Mutations:** M204I
- **Cell lines:** hNTCP-C4 — Homo sapiens (Human), Hepatitis C infection, Cancer cell line (CVCL_JY39), SNU-230103-5 — Homo sapiens (Human), Gastric adenocarcinoma, Cancer cell line (CVCL_0078), HepaRG — Homo sapiens (Human), Hepatitis C infection, Cancer cell line (CVCL_9720), HepG2-2.15 — Homo sapiens (Human), Hepatoblastoma, Cancer cell line (CVCL_L855), HepG2-NTCP-C4 — Homo sapiens (Human), Hepatoblastoma, Cancer cell line (CVCL_1098), Huh7.5 — Homo sapiens (Human), Adult hepatocellular carcinoma, Cancer cell line (CVCL_7927), C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU), HepG2-hNTCP-C4 — Homo sapiens (Human), Hepatoblastoma, Cancer cell line (CVCL_JY40), SNU-180530 — Homo sapiens (Human), Gastric adenocarcinoma, Cancer cell line (CVCL_0099), hMH55-293 — Homo sapiens (Human), Transformed cell line (CVCL_0045), HepG2 — Homo sapiens (Human), Hepatoblastoma, Cancer cell line (CVCL_0027)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13023030/full.md

## References

49 references — full list in the complete paper: https://tomesphere.com/paper/PMC13023030/full.md

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Source: https://tomesphere.com/paper/PMC13023030