# Systemic Consequences of Chronic Ethanol Intake: From Microbiome Shifts to Metabolic Impairment

**Authors:** Muni Swamy Ganjayi, Thomas A. Krauss, Gage E. Demster, Sehyung Park, Garrett B. Anspach, Sarah R. Anthony, Shaohua Wang, Michael Tranter, Robert N. Helsley, Cory W. Baumann

PMC · DOI: 10.1002/cph4.70132 · Comprehensive Physiology · 2026-03-26

## TL;DR

Long-term alcohol consumption disrupts body function by altering gut bacteria, reducing energy intake, and causing liver and metabolic issues.

## Contribution

A 60-week mouse model reveals systemic effects of chronic ethanol, including gut-liver axis disruption and microbiome changes.

## Key findings

- Chronic ethanol reduced caloric intake and body mass in mice after 52 weeks.
- Ethanol altered gut microbiota and reduced short-chain fatty acids, increasing gut permeability and liver inflammation.
- Ethanol induced dyslipidemia and glucose intolerance despite minimal changes in adipose tissue gene expression.

## Abstract

Chronic ethanol (EtOH) consumption is a major contributor to multi‐organ dysfunction, yet its systemic effects remain incompletely understood. To address this, we utilized a physiologically relevant long‐term mouse model, administering 20% EtOH in drinking water for 60 weeks, to investigate the integrated consequences of chronic exposure. EtOH‐consuming mice (0.4–0.5 mL/day) exhibited > 30% reductions in chow and fluid intake, resulting in a 12% decrease in total caloric intake compared to controls (p < 0.001). Body mass remained similar until Week 52, after which EtOH‐treated mice had lower body mass due to reductions in both lean and fat mass (p ≤ 0.004). Functional assessments revealed impaired treadmill endurance (−17%) and grip strength (−11%) (p ≤ 0.037), while motor coordination remained unaffected (p = 0.203). Chronic EtOH exposure significantly altered gut microbiota composition, reducing Lactobacillus and enriching Faecalibaculum, Clostridium, and Bifidobacterium at the genus level. These changes were accompanied by marked depletion of short‐chain fatty acids (p ≤ 0.05). Indirect markers of gut permeability (serum LPS & zonulin) and liver injury (serum ALT & AST, hepatic amyloid content) were elevated, alongside increased total cholesterol and > 62% upregulation of hepatic TNFα, IL‐6 & serum amyloid A (p ≤ 0.046). EtOH also induced dyslipidemia and glucose intolerance (p ≤ 0.041), although transcriptomic changes in white adipose tissue were minimal despite elevated free fatty acids. In conclusion, chronic EtOH consumption disrupts energy balance, compromises gut barrier integrity, and impairs hepatic metabolism, collectively driving systemic and metabolic dysfunction. These findings underscore the gut‐liver axis as a key mediator of EtOH‐induced pathology and highlight the gut microbiome as a promising therapeutic target.

Chronic ethanol intake disrupts whole‐body homeostasis by reducing energy intake and body mass, impairing physical function, and reshaping the gut microbiome. Microbiota shifts and depletion of short‐chain fatty acids increase gut permeability and drive hepatic inflammation, dyslipidemia, and glucose intolerance. Together, these effects identify the gut–liver axis as a central mediator of ethanol‐induced metabolic dysfunction.

## Linked entities

- **Chemicals:** ethanol (PubChem CID 702), ALT (PubChem CID 10219674), IL-6 (PubChem CID 165368475)
- **Species:** Mus musculus (taxon 10090)

## Full-text entities

- **Genes:** Gk (glycerol kinase) [NCBI Gene 14933] {aka D930012N15Rik, Gyk}, Lipg (lipase G, endothelial type) [NCBI Gene 16891] {aka 3110013K01Rik, EL, lipase, mEDL}, Slc17a5 (solute carrier family 17 (anion/sugar transporter), member 5) [NCBI Gene 235504] {aka 4631416G20Rik, 4732491M05, AST, ISSD, NSD, SD}, Actb (actin, beta) [NCBI Gene 11461] {aka Actx, E430023M04Rik, beta-actin}, Cel (carboxyl ester lipase) [NCBI Gene 12613] {aka 1810036E18Rik, BAL, BSSL}, App (amyloid beta precursor protein) [NCBI Gene 11820] {aka Abeta, Abpp, Adap, Ag, Cvap, E030013M08Rik}, Mvk (mevalonate kinase) [NCBI Gene 17855] {aka 2310010A05Rik, MK}, Hp (haptoglobin) [NCBI Gene 15439] {aka HP-1, preHP2}, Srebf2 (sterol regulatory element binding factor 2) [NCBI Gene 20788] {aka SREBP-2, SREBP2, SREBP2gc, bHLHd2, lop13, nuc}, Lipe (lipase E, hormone sensitive type) [NCBI Gene 16890] {aka 4933403G17Rik, HSL, REH}, Pnpla2 (patatin-like phospholipase domain containing 2) [NCBI Gene 66853] {aka 0610039C21Rik, 1110001C14Rik, Atgl, TTS-2.2}, Tnf (tumor necrosis factor) [NCBI Gene 21926] {aka DIF, TNF-a, TNF-alpha, TNFSF2, TNFalpha, Tnfa}, Il6 (interleukin 6) [NCBI Gene 16193] {aka Il-6}, Lrp1 (low density lipoprotein receptor-related protein 1) [NCBI Gene 16971] {aka A2mr, CD91, Lrp, b2b1554Clo}, Cyp2e1 (cytochrome P450, family 2, subfamily e, polypeptide 1) [NCBI Gene 13106] {aka CYPIIE1, Cyp2e}, Gpt (glutamic pyruvic transaminase, soluble) [NCBI Gene 76282] {aka 1300007J06Rik, 2310022B03Rik, ALT, ALT1, Gpt-1, Gpt1}
- **Diseases:** toxicity (MESH:D064420), glucose intolerance (MESH:D018149), cardiovascular dysfunction (MESH:D002318), AA amyloidosis (MESH:C000718787), caloric deficit (MESH:D009461), lipid (MESH:D011017), hepatic dysfunction (MESH:D008107), dysbiosis (MESH:D064806), alcohol abuse (MESH:D000437), fatigue (MESH:D005221), metabolic disturbances (MESH:D024821), liver injury (MESH:D017093), organ damage (MESH:D000092124), liver cirrhosis (MESH:D008103), adiposity (MESH:D018205), neurodegeneration (MESH:D019636), hepatic steatosis (MESH:D005234), Liver Inflammation (MESH:D007249), AA amyloid (MESH:C566236), Dyslipidemia (MESH:D050171), myopathy (MESH:D009135), multi-organ dysfunction (MESH:D009102), amyloid deposition (MESH:D058225), Liver Damage (MESH:D056486), alcoholic liver disease (MESH:D008108), metabolic (MESH:D008659), membrane damage (MESH:D015433), diseases (MESH:D004194), dysfunction (MESH:D006331), Amyloidosis (MESH:D000686), endotoxemia (MESH:D019446), impaired physical performance (MESH:D059445), fibrosis (MESH:D005355), tissue (MESH:D017695), cancer (MESH:D009369)
- **Chemicals:** SDS (MESH:D012967), eosin (MESH:D004801), Alcohol (MESH:D000438), bicarbonate (MESH:D001639), sucrose (MESH:D013395), HCl (MESH:D006851), cholic acid (MESH:D019826), LPS (MESH:D008070), MOPS (MESH:C008550), taurine (MESH:D013654), hematoxylin (MESH:D006416), Tween-20 (MESH:D011136), biotin (MESH:D001710), polyacrylamide (MESH:C016679), triglyceride (MESH:D014280), glycerol (MESH:D005990), FFA (MESH:D005230), H2O (MESH:D014867), propionate (MESH:D011422), SCFA (MESH:D005232), EDTA (MESH:D004492), xylene (MESH:D014992), butyrate (MESH:D002087), isocaproic acid (MESH:C034527), Lipid (MESH:D008055), Glucose (MESH:D005947), N2 (MESH:D009584), guanidine-HCl (MESH:D019791), H2SO4 (MESH:C033158), TMB (MESH:C021758), acetate (MESH:D000085), TBS-T (MESH:C027647), PVDF (MESH:C024865), Hydrogen (MESH:D006859), formalin (MESH:D005557), TG (MESH:D013866), 7-keto-deoxycholic acid (MESH:C023867), 2N sulfuric acid (-), paraffin (MESH:D010232), ROS (MESH:D017382), Cholesterol (MESH:D002784), isoflurane (MESH:D007530), methanol (MESH:D000432), fatty acid (MESH:D005227), H&amp;E (MESH:D006371), carbonate (MESH:D002254), TritonX-100 (MESH:D017830), EtOH (MESH:D000431), ice (MESH:D007053), bile acid (MESH:D001647), PBS (MESH:D007854), acid (MESH:D000143), phospholipid (MESH:D010743), chloroform (MESH:D002725), blood glucose (MESH:D001786), KCl (MESH:D011189)
- **Species:** Homo sapiens (human, species) [taxon 9606], Lactobacillus (genus) [taxon 1578], Bifidobacterium (genus) [taxon 1678], Mus musculus (house mouse, species) [taxon 10090], Clostridium (genus) [taxon 1485], gut metagenome (species) [taxon 749906]
- **Cell lines:** /6 — Homo sapiens (Human), Tongue squamous cell carcinoma, Cancer cell line (CVCL_5985), C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU)

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13022470/full.md

## References

82 references — full list in the complete paper: https://tomesphere.com/paper/PMC13022470/full.md

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Source: https://tomesphere.com/paper/PMC13022470