# Mixotrophy emerges as an optimal strategy in mature waters of the Amazon River plume

**Authors:** Ana Fernández-Carrera, Noémie Choisnard, Dirk Wodarg, Iris Liskow, Ajit Subramaniam, Joseph P. Montoya, Maren Voss, Natalie Loick-Wilde

PMC · DOI: 10.1038/s42003-026-09893-4 · Communications Biology · 2026-03-25

## TL;DR

Mixotrophic microalgae thrive in mature waters of the Amazon River plume, using both photosynthesis and organic matter uptake to grow in nitrogen-limited conditions.

## Contribution

This study pioneers the use of amino acid nitrogen isotopes to reveal mixotrophy as a dominant strategy in the Amazon River plume's mature waters.

## Key findings

- Mixotrophs dominate in the Outer Plume Margin, a region of mature waters around 27 days old.
- Microalgae in mature plume waters increasingly adopt mixotrophy to maximize growth in nitrogen-limited environments.
- A transition in microalgae communities occurs along the plume, from cryptophytes and diatoms to haptophytes and pico-cyanobacteria.

## Abstract

Phytoplankton, namely diatoms and cyanobacteria, combine photoautotrophy and the uptake of dissolved organic matter (osmotrophy) for a mixotrophic living. All other photosynthetic protists, except diatoms, are potentially phagotrophs, and currently classified as mixoplankton. This functional group occupies a unique position between autotrophs and heterotrophs in planktonic food webs, producing a greater carbon stock and higher-quality food for metazoans than phytoplankton do. However, field studies remain challenging due to the difficulty of distinguishing their sole activity in seston containing a mixture of all functional groups. During April/May 2018 and 2021, we examined seston using compound-specific stable nitrogen isotope analysis of amino acids to determine its trophic dynamics along the Amazon River plume. Based on the comparison of nitrogen isotopes in glutamic acid and alanine with phenylalanine, we found a dominance of mixotrophs in the Outer Plume Margin, a region of mature waters around 27 days old. Mixotrophy appears to be the optimal growth strategy in these heterogeneous margins as part of the succession of microalgae functional diversity along the plume. Our study highlights the urgent need to study mixotrophs and mixoplankton in situ within a multidisciplinary framework, pioneering the use of amino acid nitrogen isotopes in field research in this area.

There is a transition between four distinct microalgae communities through a mosaic of habitats with different physicochemical conditions associated with the aging of the Amazon River plume, progressing from dominance by cryptophytes and diatoms in young to haptophytes and pico-cyanobacteria in aged plume water. Nitrogen stable isotopes of amino acids show an increase in mixotrophy among the microalgae in mature waters of the plume, highlighting the importance of heterotrophic strategies for maximizing microalgae growth in nitrogen limited environments.

## Full-text entities

- **Genes:** RERE (arginine-glutamic acid dipeptide repeats) [NCBI Gene 473] {aka ARG, ARP, ATN1L, DNB1, NEDBEH}
- **Chemicals:** Perid (MESH:C016040), phosphate (MESH:D010710), Phe (MESH:D010649), Ser (MESH:D012694), Lys (MESH:D008239), Ile (MESH:D007532), Nitrate (MESH:D009566), DV Chl b (-), Fuco (MESH:C025164), Neo (MESH:C011947), silicate (MESH:D017640), Ala (MESH:D000409), tungsten (MESH:D014414), 13C (MESH:C000615229), Leu (MESH:D007930), Cys (MESH:D003545), Asp (MESH:D001216), Lut (MESH:D014975), Amino acids (MESH:D000596), acids (MESH:D000143), glutamine (MESH:D005973), c2 (MESH:C023714), casamino acids (MESH:C017721), Glu (MESH:D018698), Thr (MESH:D013912), oxygen (MESH:D010100), Val (MESH:D014633), Chl b (MESH:C037184), salt (MESH:D012492), Met (MESH:D008715), C (MESH:D002244), CO2 (MESH:D002245), ammonium (MESH:D064751), Arg (MESH:D001120), HCl (MESH:D006851), Allo (MESH:C006462), DON (MESH:D000090422), aspartic acid (MESH:D001224), Pras (MESH:C579077), Viola (MESH:C005613), N (MESH:D009584), Pro (MESH:D011392), Tyr (MESH:D014443), nitrite (MESH:D009573), Water (MESH:D014867), phosphorus (MESH:D010758), Gly (MESH:D005998), deuterium (MESH:D003903), Zea (MESH:D065146)
- **Species:** Cyanobacteriota (blue-green algae, phylum) [taxon 1117], Trichodesmium (genus) [taxon 1205], Synechococcus (genus) [taxon 1129], Oxyrrhis marina (species) [taxon 2969], Palmophyllophyceae (class) [taxon 2201463], Haptophyta (coccolithophorids, phylum) [taxon 2830], Cryptophyceae (cryptomonads, class) [taxon 3027], Prasinococcus (genus) [taxon 110669], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395], Kryptoperidinium triquetrum (species) [taxon 66468], Ostreococcus (genus) [taxon 70447], Foraminifera (foraminifers, phylum) [taxon 29178], Gephyrocapsa (genus) [taxon 38816], Fungi (kingdom) [taxon 4751], Prochlorococcus (genus) [taxon 1218], Nostoc (genus) [taxon 1177], Bacillariophyta (bacillariophytes, phylum) [taxon 2836], Parvimonas (genus) [taxon 543311]
- **Mutations:** alanine with phenylalanine, alanine with phenylalanine

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC13022006/full.md

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13022006/full.md

## References

27 references — full list in the complete paper: https://tomesphere.com/paper/PMC13022006/full.md

---
Source: https://tomesphere.com/paper/PMC13022006