# Dopamine neuron specific RNA-sequencing reveals Neprilysin 1 acts downstream of the cohesin complex to suppress learning

**Authors:** Illia Pimenov, Courtney M. MacMullen, Chisom Ezeh, Amoolya Sai Dwijesha, Justine David, Akhila Eswaran, Ronald L. Davis, Anna Phan

PMC · DOI: 10.1038/s42003-026-09690-z · Communications Biology · 2026-02-16

## TL;DR

A study in fruit flies finds that a protein called Neprilysin 1, regulated by a cohesin complex, limits learning by controlling dopamine neuron activity.

## Contribution

The study identifies Neprilysin 1 as a downstream effector of the cohesin complex subunit Stromalin in regulating learning.

## Key findings

- Neprilysin 1 is positively regulated by the cohesin complex and acts downstream of Stromalin.
- Knocking down Neprilysin 1 enhances learning and increases synaptic vesicle markers in dopamine neurons.
- Neprilysin 1 overexpression rescues memory and synaptic phenotypes caused by Stromalin reduction.

## Abstract

We previously identified Stromalin, a cohesin complex subunit, as a learning suppressor in Drosophila melanogaster that acts by limiting synaptic vesicle numbers in dopamine neurons. However, the mechanism by which Stromalin modulates synaptic vesicles remains unclear. We hypothesized that this occurred through the cohesin complex’s function in developmental gene regulation. Through dopamine neuron-specific RNA-sequencing followed by RNAi screening, we identified Neprilysin 1 (Nep1), a zinc-dependent metallopeptidase, to be positively regulated by the cohesin complex and a key downstream effector of Stromalin. Nep1 knockdown phenocopies Stromalin knockdown effects, enhancing learning and memory and increasing synaptic vesicle markers in dopamine neurons. Like Stromalin, Nep1 suppresses synaptic strength between dopamine and mushroom body neurons. Finally, we show Nep1 overexpression rescues both memory and synaptic vesicle phenotypes caused by Stromalin reduction. Interestingly, while cohesin complex appears to set the expression levels for Nep1 during development, Nep1 function in adult flies supports its learning effects.

Dopamine neuron specific RNA-sequencing reveals Neprilysin 1 to be positively regulated by the cohesin complex and a key downstream effector of Stromalin that suppresses learning by limiting synaptic vesicle numbers in dopamine neurons.

## Linked entities

- **Genes:** SA1 (Stromalin 1) [NCBI Gene 33974], EMG1 (EMG1 N1-specific pseudouridine methyltransferase) [NCBI Gene 10436]
- **Species:** Drosophila melanogaster (taxon 7227)

## Full-text entities

- **Genes:** Nep1 (Neprilysin 1) [NCBI Gene 31547] {aka CG5894, CG5905, CG5914, DmeNEP1, Dmel\CG5905, NEP}, SA1 (Stromalin 1) [NCBI Gene 33974] {aka CG3423, DSA, DSA1, DmSA, Dmel\CG3423, ESTS:92H2T}
- **Chemicals:** Dopamine (MESH:D004298)
- **Species:** Drosophila melanogaster (fruit fly, species) [taxon 7227], Melanogaster (genus) [taxon 80614]

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC13021968/full.md

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Source: https://tomesphere.com/paper/PMC13021968